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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Actinobacteria
Anticodon = ACG
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.458073 (9 seq.)
>W1711317115
MAXA01000136
Actinomycetota
Parafrankia soli NRRL B-16219 [MAXA]
40763
40690
-
Arg
ACG
[ENA]
¡û
>W1711603610
MOME01000038
Actinomycetota
Protofrankia sp. BMG5.30 BMG5.30 [MOME]
63356
63429
+
Arg
ACG
[ENA]
¡û
>W131168055
ARDT01000046
Actinomycetota
Parafrankia discariae BCU110501 [ARDT]
44107
44180
+
Arg
ACG
[ENA]
¡û
>w007136
AAII01000128
Actinomycetota
Frankia sp. EAN1pec [AAII]
4931
5006
+
Arg
ACG
[ENA]
¡û
>C08005078
CP000820
Actinomycetota
Frankia sp. EAN1pec EAN1.pec [CP000820]
7658686
7658759
+
Arg
ACG
[Ensembl]
¡û
>W10114066
ADGT01000075
Actinobacteria
Frankia symbiont of Datisca glomerata [ADGT] of Datisca glomerata [ADGT]
21978
22051
+
Arg
ACG
[ENA]
¡û
>C11109395
CP002801
Actinomycetota
Candidatus Protofrankia datiscae Dg1 [CP002801]
113407
113334
-
Arg
ACG
[Ensembl]
¡û
>W11117402
ADGT01000075
Actinobacteria
Frankia symbiont of Datisca glomerata [ADGT] of Datisca glomerata [ADGT]
21978
22051
+
Arg
ACG
[ENA]
¡û
>W1511479832
JWIO01000025
Actinomycetota
Protofrankia coriariae BMG5.1 [JWIO]
69859
69932
+
Arg
ACG
[ENA]
¡û
Identical group No.507353 (7 seq.)
>W1810167495
PJIN01000005
Actinomycetota
Arthrobacter sp. N199823 [PJIN]
81654
81727
+
Arg
ACG
[ENA]
¡û
>W1810167496
PJIN01000005
Actinomycetota
Arthrobacter sp. N199823 [PJIN]
81839
81912
+
Arg
ACG
[ENA]
¡û
>W1810242477
PPXB01000001
Actinomycetota
Arthrobacter glacialis TMN-18 [PPXB]
397162
397089
-
Arg
ACG
[ENA]
¡û
>W1810242528
PPXC01000001
Actinomycetota
Arthrobacter glacialis HLT2-12-2 [PPXC]
449553
449480
-
Arg
ACG
[ENA]
¡û
>W1511343684
JREV01000043
Actinobacteria
Arthrobacter sp. A3 [JREV] A3 [JREV]
49652
49725
+
Arg
ACG
[ENA]
¡û
>C161060681
CP013745
Actinomycetota
Arthrobacter alpinus A3 [CP013745]
4175338
4175265
-
Arg
ACG
[Ensembl]
¡û
>W1710537468
FNTV01000001
Actinomycetota
Arthrobacter alpinus [FNTV]
2867447
2867520
+
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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