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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Actinobacteria
Anticodon = CAA
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.220666 (10 seq.)
>W1810167511
PJIN01000010
Actinomycetota
Arthrobacter sp. N199823 [PJIN]
112883
112964
+
Leu
CAA
[ENA]
¡û
>W1810167560
PJIO01000020
Actinomycetota
Arthrobacter sp. GMC3 [PJIO]
46952
47033
+
Leu
CAA
[ENA]
¡û
>W1810242519
PPXB01000014
Actinomycetota
Arthrobacter glacialis TMN-18 [PPXB]
104594
104675
+
Leu
CAA
[ENA]
¡û
>W1810242567
PPXC01000008
Actinomycetota
Arthrobacter glacialis HLT2-12-2 [PPXC]
98678
98597
-
Leu
CAA
[ENA]
¡û
>W1810673909
QJVC01000009
Actinomycetota
Arthrobacter psychrolactophilus B7 [QJVC]
102214
102295
+
Leu
CAA
[ENA]
¡û
>C151095043
CP012479
Actinomycetota
Arthrobacter sp. ERGS1:01 [CP012479]
1179266
1179347
+
Leu
CAA
-
¡û
>W1511343664
JREV01000008
Actinobacteria
Arthrobacter sp. A3 [JREV] A3 [JREV]
55537
55620
+
Leu
CAA
[ENA]
¡û
>C161052864
CP013200
Actinomycetota
Arthrobacter alpinus ERGS4:06 [CP013200]
3033062
3032981
-
Leu
CAA
[Ensembl]
¡û
>C161060709
CP013745
Actinomycetota
Arthrobacter alpinus A3 [CP013745]
1740261
1740178
-
Leu
CAA
[Ensembl]
¡û
>W1710537462
FNTV01000001
Actinomycetota
Arthrobacter alpinus [FNTV]
1099569
1099650
+
Leu
CAA
[ENA]
¡û
Identical group No.458724 (6 seq.)
>W1711603622
MOME01000062
Actinomycetota
Protofrankia sp. BMG5.30 BMG5.30 [MOME]
9210
9135
-
Leu
CAA
[ENA]
¡û
>W10114062
ADGT01000063
Actinobacteria
Frankia symbiont of Datisca glomerata [ADGT] of Datisca glomerata [ADGT]
27472
27547
+
Leu
CAA
[ENA]
¡û
>C11109382
CP002801
Actinomycetota
Candidatus Protofrankia datiscae Dg1 [CP002801]
2510802
2510727
-
Leu
CAA
[Ensembl]
¡û
>W11117398
ADGT01000063
Actinobacteria
Frankia symbiont of Datisca glomerata [ADGT] of Datisca glomerata [ADGT]
27472
27547
+
Leu
CAA
[ENA]
¡û
>W1511479843
JWIO01000055
Actinomycetota
Protofrankia coriariae BMG5.1 [JWIO]
8819
8744
-
Leu
CAA
[ENA]
¡û
>W1610507950
FLUV01001715
Actinomycetota
Candidatus Protofrankia californiensis sp. [FLUV]
435
508
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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