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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Actinobacteria
Anticodon = CAC
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.656711 (33 seq.)
>W1710783829
LJFZ01000024
Actinomycetota
Frankia sp. AvcI1 [LJFZ]
89849
89921
+
Val
CAC
[ENA]
¡û
>W1710787561
LJJX01000005
Actinomycetota
Frankia sp. CpI1-P [LJJX]
183796
183724
-
Val
CAC
[ENA]
¡û
>W1710793199
LJPA01000005
Actinomycetota
Frankia sp. ACN1ag [LJPA]
87959
88031
+
Val
CAC
[ENA]
¡û
>W1711053896
LRTJ01000010
Actinomycetota
Frankia casuarinae BR [LRTJ]
4577
4649
+
Val
CAC
[ENA]
¡û
>W1711309680
MAQZ01000125
Actinomycetota
Frankia sp. CgIM4 [MAQZ]
203695
203623
-
Val
CAC
[ENA]
¡û
>W1711317109
MAXA01000113
Actinomycetota
Parafrankia soli NRRL B-16219 [MAXA]
220712
220784
+
Val
CAC
[ENA]
¡û
>W1711328982
MBLP01000001
Actinomycetota
Frankia sp. CgIS1 [MBLP]
26390
26462
+
Val
CAC
[ENA]
¡û
>W1711603549
MOMD01000005
Actinomycetota
Frankia sp. CcI156 [MOMD]
26382
26454
+
Val
CAC
[ENA]
¡û
>W1711603601
MOME01000022
Actinomycetota
Protofrankia sp. BMG5.30 BMG5.30 [MOME]
39590
39662
+
Val
CAC
[ENA]
¡û
>W1711678704
MRUJ01000253
Actinomycetota
Frankia sp. KB5 [MRUJ]
570
498
-
Val
CAC
[ENA]
¡û
>W1711689401
MSEA01000245
Actinomycetota
Frankia casuarinae Cg70.9 [MSEA]
25932
26004
+
Val
CAC
[ENA]
¡û
>W131168023
ARDT01000002
Actinomycetota
Parafrankia discariae BCU110501 [ARDT]
329233
329161
-
Val
CAC
[ENA]
¡û
>C009355
CT573213
Actinomycetota
Frankia alni ACN14a [CT573213]
2325024
2325095
+
Val
CAC
[Ensembl]
¡û
>C009552
CP000249
Actinomycetota
Frankia casuarinae CcI3 [CP000249]
1633415
1633486
+
Val
CAC
[Ensembl]
¡û
>w007134
AAII01000123
Actinomycetota
Frankia sp. EAN1pec [AAII]
353
279
-
Val
CAC
[ENA]
¡û
>W141195301
AYTZ01000020
Actinomycetota
Frankia sp. CcI6 [AYTZ]
26549
26621
+
Val
CAC
[ENA]
¡û
>C08005092
CP000820
Actinomycetota
Frankia sp. EAN1pec EAN1.pec [CP000820]
6181519
6181447
-
Val
CAC
[Ensembl]
¡û
>W141403427
JDWE01000007
Actinomycetota
Frankia sp. BMG5.23 [JDWE]
26418
26490
+
Val
CAC
[ENA]
¡û
>W141427351
JENI01000007
Actinomycetota
Frankia casuarinae Thr [JENI]
67000
67072
+
Val
CAC
[ENA]
¡û
>W09102687
AAIE01000002
Actinomycetota
Frankia casuarinae CcI3 [AAIE]
89683
89611
-
Val
CAC
[ENA]
¡û
>W141803579
JPGU01000004
Actinomycetota
Frankia sp. CeD [JPGU]
148852
148780
-
Val
CAC
[ENA]
¡û
>W141804406
JPHT01000023
Actinomycetota
Frankia sp. Allo2 [JPHT]
17555
17483
-
Val
CAC
[ENA]
¡û
>W10114036
ADGT01000008
Actinobacteria
Frankia symbiont of Datisca glomerata [ADGT] of Datisca glomerata [ADGT]
54589
54517
-
Val
CAC
[ENA]
¡û
>C11109380
CP002801
Actinomycetota
Candidatus Protofrankia datiscae Dg1 [CP002801]
3043540
3043468
-
Val
CAC
[Ensembl]
¡û
>W11117372
ADGT01000008
Actinobacteria
Frankia symbiont of Datisca glomerata [ADGT] of Datisca glomerata [ADGT]
54589
54517
-
Val
CAC
[ENA]
¡û
>W1511479823
JWIO01000014
Actinomycetota
Protofrankia coriariae BMG5.1 [JWIO]
41290
41218
-
Val
CAC
[ENA]
¡û
>W1511524715
JYFN01000004
Actinomycetota
Frankia torreyi CpI1-S [JYFN]
41724
41796
+
Val
CAC
[ENA]
¡û
>W121069957
AJWA01000050
Actinomycetota
Frankia sp. QA3 [AJWA]
77659
77587
-
Val
CAC
[ENA]
¡û
>W1610507947
FLUV01001678
Actinomycetota
Candidatus Protofrankia californiensis sp. [FLUV]
1764
1692
-
Val
CAC
[ENA]
¡û
>W1610648337
LJFZ01000024
Actinomycetota
Frankia sp. AvcI1 [LJFZ]
89849
89921
+
Val
CAC
[ENA]
¡û
>W1610651416
LJJX01000005
Actinomycetota
Frankia sp. CpI1-P [LJJX]
183796
183724
-
Val
CAC
[ENA]
¡û
>W1610657203
LJPA01000005
Actinomycetota
Frankia sp. ACN1ag [LJPA]
87959
88031
+
Val
CAC
[ENA]
¡û
>W1610895084
LRTJ01000010
Actinomycetota
Frankia casuarinae BR [LRTJ]
4577
4649
+
Val
CAC
[ENA]
¡û
Identical group No.686253 (10 seq.)
>W1810167512
PJIN01000010
Actinomycetota
Arthrobacter sp. N199823 [PJIN]
79571
79497
-
Val
CAC
[ENA]
¡û
>W1810167559
PJIO01000020
Actinomycetota
Arthrobacter sp. GMC3 [PJIO]
17685
17759
+
Val
CAC
[ENA]
¡û
>W1810242520
PPXB01000014
Actinomycetota
Arthrobacter glacialis TMN-18 [PPXB]
73762
73686
-
Val
CAC
[ENA]
¡û
>W1810242560
PPXC01000008
Actinomycetota
Arthrobacter glacialis HLT2-12-2 [PPXC]
129529
129605
+
Val
CAC
[ENA]
¡û
>W1810627327
QHLZ01000005
Actinomycetota
Arthrobacter psychrochitiniphilus GP3 [QHLZ]
266752
266678
-
Val
CAC
[ENA]
¡û
>W1810673910
QJVC01000009
Actinomycetota
Arthrobacter psychrolactophilus B7 [QJVC]
72077
72003
-
Val
CAC
[ENA]
¡û
>W1511343665
JREV01000008
Actinobacteria
Arthrobacter sp. A3 [JREV] A3 [JREV]
25266
25192
-
Val
CAC
[ENA]
¡û
>C161052849
CP013200
Actinomycetota
Arthrobacter alpinus ERGS4:06 [CP013200]
3064281
3064355
+
Val
CAC
[Ensembl]
¡û
>C161060669
CP013745
Actinomycetota
Arthrobacter alpinus A3 [CP013745]
1770532
1770606
+
Val
CAC
[Ensembl]
¡û
>W1710537490
FNTV01000001
Actinomycetota
Arthrobacter alpinus [FNTV]
1069281
1069207
-
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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