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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Actinobacteria
Anticodon = CCG
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.507352 (10 seq.)
>W1810167482
PJIN01000002
Actinomycetota
Arthrobacter sp. N199823 [PJIN]
295421
295348
-
Arg
CCG
[ENA]
¡û
>W1810167566
PJIO01000022
Actinomycetota
Arthrobacter sp. GMC3 [PJIO]
31302
31375
+
Arg
CCG
[ENA]
¡û
>W1810242490
PPXB01000004
Actinomycetota
Arthrobacter glacialis TMN-18 [PPXB]
240574
240647
+
Arg
CCG
[ENA]
¡û
>W1810242537
PPXC01000003
Actinomycetota
Arthrobacter glacialis HLT2-12-2 [PPXC]
158020
158093
+
Arg
CCG
[ENA]
¡û
>W1810673889
QJVC01000002
Actinomycetota
Arthrobacter psychrolactophilus B7 [QJVC]
213787
213860
+
Arg
CCG
[ENA]
¡û
>C151029483
CP007595
Actinomycetota
Arthrobacter sp. PAMC 25486 [CP007595]
1514428
1514501
+
Arg
CCG
[Ensembl]
¡û
>W1511343667
JREV01000021
Actinobacteria
Arthrobacter sp. A3 [JREV] A3 [JREV]
93059
93132
+
Arg
CCG
[ENA]
¡û
>C161052870
CP013200
Actinomycetota
Arthrobacter alpinus ERGS4:06 [CP013200]
1747787
1747714
-
Arg
CCG
[Ensembl]
¡û
>C161060674
CP013745
Actinomycetota
Arthrobacter alpinus A3 [CP013745]
2466748
2466821
+
Arg
CCG
[Ensembl]
¡û
>W1710537495
FNTV01000001
Actinomycetota
Arthrobacter alpinus [FNTV]
328132
328059
-
Arg
CCG
[ENA]
¡û
Identical group No.657113 (14 seq.)
>W1711328881
MBLN01000048
Actinomycetota
Pseudofrankia sp. EUN1h EUN1h [MBLN]
172760
172688
-
Arg
CCG
[ENA]
¡û
>W1711328952
MBLO01000158
Actinomycetota
Pseudofrankia sp. BMG5.36 BMG5.36 [MBLO]
166
94
-
Arg
CCG
[ENA]
¡û
>W1711603503
MOMC01000042
Actinomycetota
Pseudofrankia asymbiotica NRRL B-16386 [MOMC]
78992
79064
+
Arg
CCG
[ENA]
¡û
>W1711603592
MOME01000013
Actinomycetota
Protofrankia sp. BMG5.30 BMG5.30 [MOME]
62914
62986
+
Arg
CCG
[ENA]
¡û
>W1810531643
QCXS01000002
Actinomycetota
Nakamurella deserti 12Sc4-1 [QCXS]
704005
703932
-
Arg
CCG
[ENA]
¡û
>W10111550
ADDL01000041
Actinomycetota
Pseudofrankia inefficax EuI1c [ADDL]
30956
30884
-
Arg
CCG
[ENA]
¡û
>W10114055
ADGT01000043
Actinobacteria
Frankia symbiont of Datisca glomerata [ADGT] of Datisca glomerata [ADGT]
26116
26188
+
Arg
CCG
[ENA]
¡û
>C11109227
CP002299
Actinomycetota
Pseudofrankia inefficax EuI1c [CP002299]
1150469
1150397
-
Arg
CCG
[Ensembl]
¡û
>C11109369
CP002801
Actinomycetota
Candidatus Protofrankia datiscae Dg1 [CP002801]
4531593
4531665
+
Arg
CCG
[Ensembl]
¡û
>W11114477
ADDL01000041
Actinomycetota
Pseudofrankia inefficax EuI1c [ADDL]
30956
30884
-
Arg
CCG
[ENA]
¡û
>W11117391
ADGT01000043
Actinobacteria
Frankia symbiont of Datisca glomerata [ADGT] of Datisca glomerata [ADGT]
26116
26188
+
Arg
CCG
[ENA]
¡û
>W1511479811
JWIO01000003
Actinomycetota
Protofrankia coriariae BMG5.1 [JWIO]
239680
239608
-
Arg
CCG
[ENA]
¡û
>W1511573803
LANG01000006
Actinomycetota
Pseudofrankia sp. DC12 DC12 [LANG]
400102
400174
+
Arg
CCG
[ENA]
¡û
>W121010764
AGJN01000034
Actinomycetota
Pseudofrankia saprophytica CN3 [AGJN]
27922
27850
-
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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