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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Actinobacteria
Anticodon = CGT
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.481131 (13 seq.)
>PL171000858
CP012477
Actinobacteria
Arthrobacter sp. ERGS1:01 plasmid:unnamed2
569235
569162
-
Thr
CGT
[ENA]
¡û
>C181182553
CP029642
Actinomycetota
Arthrobacter dokdonellae [CP029642]
1074683
1074608
-
Thr
CGT
-
¡û
>W1910841605
NADW01000018
Bacillota
Bacillus sp. SRB_336 [NADW]
14825
14900
+
Thr
CGT
[ENA]
¡û
>W1810167492
PJIN01000005
Actinomycetota
Arthrobacter sp. N199823 [PJIN]
35463
35538
+
Thr
CGT
[ENA]
¡û
>W1810242474
PPXB01000001
Actinomycetota
Arthrobacter glacialis TMN-18 [PPXB]
449549
449474
-
Thr
CGT
[ENA]
¡û
>W1810242525
PPXC01000001
Actinomycetota
Arthrobacter glacialis HLT2-12-2 [PPXC]
501890
501815
-
Thr
CGT
[ENA]
¡û
>W1810627300
QHLZ01000002
Actinomycetota
Arthrobacter psychrochitiniphilus GP3 [QHLZ]
34250
34325
+
Thr
CGT
[ENA]
¡û
>W1810673922
QJVC01000015
Actinomycetota
Arthrobacter psychrolactophilus B7 [QJVC]
48299
48224
-
Thr
CGT
[ENA]
¡û
>W1810673937
QJVD01000001
Actinomycetota
Arthrobacter livingstonensis LI2 [QJVD]
418169
418094
-
Thr
CGT
[ENA]
¡û
>W1511343681
JREV01000043
Actinobacteria
Arthrobacter sp. A3 [JREV] A3 [JREV]
1298
1373
+
Thr
CGT
[ENA]
¡û
>C161052823
CP013200
Actinomycetota
Arthrobacter alpinus ERGS4:06 [CP013200]
64934
65009
+
Thr
CGT
[Ensembl]
¡û
>C161060678
CP013745
Actinomycetota
Arthrobacter alpinus A3 [CP013745]
4223692
4223617
-
Thr
CGT
[Ensembl]
¡û
>W1710537465
FNTV01000001
Actinomycetota
Arthrobacter alpinus [FNTV]
2818902
2818977
+
Thr
CGT
[ENA]
¡û
Identical group No.656714 (45 seq.)
>W1710783816
LJFZ01000011
Actinomycetota
Frankia sp. AvcI1 [LJFZ]
139939
139867
-
Thr
CGT
[ENA]
¡û
>W1710787565
LJJX01000009
Actinomycetota
Frankia sp. CpI1-P [LJJX]
44226
44298
+
Thr
CGT
[ENA]
¡û
>W1710793211
LJPA01000009
Actinomycetota
Frankia sp. ACN1ag [LJPA]
114740
114812
+
Thr
CGT
[ENA]
¡û
>W1711053891
LRTJ01000007
Actinomycetota
Frankia casuarinae BR [LRTJ]
62089
62161
+
Thr
CGT
[ENA]
¡û
>W1711053942
LRTK01000010
Actinomycetota
Frankia sp. EI5c [LRTK]
103862
103934
+
Thr
CGT
[ENA]
¡û
>W1711317132
MAXA01000247
Actinomycetota
Parafrankia soli NRRL B-16219 [MAXA]
2966
2894
-
Thr
CGT
[ENA]
¡û
>W1711328853
MBLM01000163
Actinomycetota
Parafrankia colletiae Cc1.17 [MBLM]
104286
104358
+
Thr
CGT
[ENA]
¡û
>W1711329023
MBLP01000103
Actinomycetota
Frankia sp. CgIS1 [MBLP]
146620
146548
-
Thr
CGT
[ENA]
¡û
>W1711603544
MOMD01000003
Actinomycetota
Frankia sp. CcI156 [MOMD]
66088
66160
+
Thr
CGT
[ENA]
¡û
>W1711612441
MOWP01000023
Actinomycetota
Frankia sp. CcI49 [MOWP]
133356
133430
+
Thr
CGT
[ENA]
¡û
>W1711678689
MRUJ01000079
Actinomycetota
Frankia sp. KB5 [MRUJ]
15930
15858
-
Thr
CGT
[ENA]
¡û
>W1711689391
MSEA01000110
Actinomycetota
Frankia casuarinae Cg70.9 [MSEA]
142
70
-
Thr
CGT
[ENA]
¡û
>W131168049
ARDT01000013
Actinomycetota
Parafrankia discariae BCU110501 [ARDT]
148793
148721
-
Thr
CGT
[ENA]
¡û
>W131170113
ARFH01000019
Actinomycetota
Parafrankia elaeagni BMG5.12 [ARFH]
15855
15927
+
Thr
CGT
[ENA]
¡û
>C009363
CT573213
Actinomycetota
Frankia alni ACN14a [CT573213]
7167643
7167714
+
Thr
CGT
[Ensembl]
¡û
>C009559
CP000249
Actinomycetota
Frankia casuarinae CcI3 [CP000249]
5148262
5148333
+
Thr
CGT
[Ensembl]
¡û
>w007102
AAII01000010
Actinomycetota
Frankia sp. EAN1pec [AAII]
36208
36282
+
Thr
CGT
[ENA]
¡û
>WENV181123036
OEFO01047988
[OEFO] soil metagenome; soil
16
89
+
Thr
CGT
[ENA]
¢þ
>W141195298
AYTZ01000015
Actinomycetota
Frankia sp. CcI6 [AYTZ]
95358
95430
+
Thr
CGT
[ENA]
¡û
>C08005096
CP000820
Actinomycetota
Frankia sp. EAN1pec EAN1.pec [CP000820]
359029
358957
-
Thr
CGT
[Ensembl]
¡û
>W141403441
JDWE01000014
Actinomycetota
Frankia sp. BMG5.23 [JDWE]
61756
61684
-
Thr
CGT
[ENA]
¡û
>W141427358
JENI01000012
Actinomycetota
Frankia casuarinae Thr [JENI]
79176
79248
+
Thr
CGT
[ENA]
¡û
>W09102688
AAIE01000003
Actinomycetota
Frankia casuarinae CcI3 [AAIE]
29876
29948
+
Thr
CGT
[ENA]
¡û
>W141803573
JPGU01000003
Actinomycetota
Frankia sp. CeD [JPGU]
233156
233084
-
Thr
CGT
[ENA]
¡û
>W141804373
JPHT01000001
Actinomycetota
Frankia sp. Allo2 [JPHT]
446706
446634
-
Thr
CGT
[ENA]
¡û
>W1910546330
FZMO01000059
Actinomycetota
Frankia canadensis ARgP5 [FZMO]
16645
16717
+
Thr
CGT
[ENA]
¡û
>W1911504295
OESX01000059
Actinomycetota
Frankia canadensis ARgP5 [OESX]
16645
16717
+
Thr
CGT
[ENA]
¡û
>W10114047
ADGT01000031
Actinobacteria
Frankia symbiont of Datisca glomerata [ADGT] of Datisca glomerata [ADGT]
1786
1858
+
Thr
CGT
[ENA]
¡û
>W10114189
ADGX01000095
Actinomycetota
Parafrankia sp. EUN1f EUN1f [ADGX]
18122
18196
+
Thr
CGT
[ENA]
¡û
>C11109388
CP002801
Actinomycetota
Candidatus Protofrankia datiscae Dg1 [CP002801]
783940
783868
-
Thr
CGT
[Ensembl]
¡û
>W11117383
ADGT01000031
Actinobacteria
Frankia symbiont of Datisca glomerata [ADGT] of Datisca glomerata [ADGT]
1786
1858
+
Thr
CGT
[ENA]
¡û
>W11117525
ADGX01000095
Actinomycetota
Parafrankia sp. EUN1f EUN1f [ADGX]
18122
18196
+
Thr
CGT
[ENA]
¡û
>W1511479830
JWIO01000024
Actinomycetota
Protofrankia coriariae BMG5.1 [JWIO]
46126
46054
-
Thr
CGT
[ENA]
¡û
>W1511524720
JYFN01000006
Actinomycetota
Frankia torreyi CpI1-S [JYFN]
86222
86294
+
Thr
CGT
[ENA]
¡û
>W121069982
AJWA01000084
Actinomycetota
Frankia sp. QA3 [AJWA]
80465
80393
-
Thr
CGT
[ENA]
¡û
>W1610163591
FAOZ01000019
Actinomycetota
Parafrankia irregularis DSM 45899 [FAOZ]
33500
33426
-
Thr
CGT
[ENA]
¡û
>W1610507935
FLUV01000414
Actinomycetota
Candidatus Protofrankia californiensis sp. [FLUV]
304
232
-
Thr
CGT
[ENA]
¡û
>W1610597132
LFCW01000006
Actinomycetota
Frankia sp. R43 [LFCW]
594185
594111
-
Thr
CGT
[ENA]
¡û
>W1610648324
LJFZ01000011
Actinomycetota
Frankia sp. AvcI1 [LJFZ]
139939
139867
-
Thr
CGT
[ENA]
¡û
>W1610651420
LJJX01000009
Actinomycetota
Frankia sp. CpI1-P [LJJX]
44226
44298
+
Thr
CGT
[ENA]
¡û
>W1610657215
LJPA01000009
Actinomycetota
Frankia sp. ACN1ag [LJPA]
114740
114812
+
Thr
CGT
[ENA]
¡û
>W1610895079
LRTJ01000007
Actinomycetota
Frankia casuarinae BR [LRTJ]
62089
62161
+
Thr
CGT
[ENA]
¡û
>W1610895130
LRTK01000010
Actinomycetota
Frankia sp. EI5c [LRTK]
103862
103934
+
Thr
CGT
[ENA]
¡û
>W1710165258
FAOZ01000019
Actinomycetota
Parafrankia irregularis DSM 45899 [FAOZ]
33500
33426
-
Thr
CGT
[ENA]
¡û
>W1710718291
LFCW01000006
Actinomycetota
Frankia sp. R43 [LFCW]
594185
594111
-
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK