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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Actinobacteria
Anticodon = CTG
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.657110 (14 seq.)
>W1711328877
MBLN01000045
Actinomycetota
Pseudofrankia sp. EUN1h EUN1h [MBLN]
247889
247817
-
Gln
CTG
[ENA]
¡û
>W1711328953
MBLO01000210
Actinomycetota
Pseudofrankia sp. BMG5.36 BMG5.36 [MBLO]
185358
185284
-
Gln
CTG
[ENA]
¡û
>W1711603486
MOMC01000017
Actinomycetota
Pseudofrankia asymbiotica NRRL B-16386 [MOMC]
71254
71326
+
Gln
CTG
[ENA]
¡û
>W1711603590
MOME01000012
Actinomycetota
Protofrankia sp. BMG5.30 BMG5.30 [MOME]
9896
9824
-
Gln
CTG
[ENA]
¡û
>W10111564
ADDL01000105
Actinomycetota
Pseudofrankia inefficax EuI1c [ADDL]
9093
9167
+
Gln
CTG
[ENA]
¡û
>W10114051
ADGT01000037
Actinobacteria
Frankia symbiont of Datisca glomerata [ADGT] of Datisca glomerata [ADGT]
17811
17739
-
Gln
CTG
[ENA]
¡û
>C11109196
CP002299
Actinomycetota
Pseudofrankia inefficax EuI1c [CP002299]
1299062
1299136
+
Gln
CTG
[Ensembl]
¡û
>C11109377
CP002801
Actinomycetota
Candidatus Protofrankia datiscae Dg1 [CP002801]
4384056
4383984
-
Gln
CTG
[Ensembl]
¡û
>W11114491
ADDL01000105
Actinomycetota
Pseudofrankia inefficax EuI1c [ADDL]
9093
9167
+
Gln
CTG
[ENA]
¡û
>W11117387
ADGT01000037
Actinobacteria
Frankia symbiont of Datisca glomerata [ADGT] of Datisca glomerata [ADGT]
17811
17739
-
Gln
CTG
[ENA]
¡û
>W1511479804
JWIO01000002
Actinomycetota
Protofrankia coriariae BMG5.1 [JWIO]
79915
79987
+
Gln
CTG
[ENA]
¡û
>W1511573807
LANG01000006
Actinomycetota
Pseudofrankia sp. DC12 DC12 [LANG]
258037
257963
-
Gln
CTG
[ENA]
¡û
>W121010779
AGJN01000060
Actinomycetota
Pseudofrankia saprophytica CN3 [AGJN]
38220
38292
+
Gln
CTG
[ENA]
¡û
>W1610507953
FLUV01002265
Actinomycetota
Candidatus Protofrankia californiensis sp. [FLUV]
2304
2232
-
Gln
CTG
[ENA]
¡û
Identical group No.670273 (34 seq.)
>W131087475
AOCN01000022
Actinomycetota
Leucobacter salsicius M1-8 [AOCN]
179410
179484
+
Gln
CTG
[ENA]
¡û
>C08008423
CP000910
Actinomycetota
Renibacterium salmoninarum ATCC 33209 [CP000910]
1559177
1559105
-
Gln
CTG
[Ensembl]
¡û
>C181176317
CP029236
Actinomycetota
Renibacterium salmoninarum H2 [CP029236]
1559197
1559125
-
Gln
CTG
-
¡û
>C181176359
CP029237
Actinomycetota
Renibacterium salmoninarum DJ2R [CP029237]
1559154
1559082
-
Gln
CTG
-
¡û
>C181182540
CP029642
Actinomycetota
Arthrobacter dokdonellae [CP029642]
3445550
3445478
-
Gln
CTG
-
¡û
>W1910373973
FUHW01000032
Actinomycetota
Arthrobacter rhombi B Ar 00.02 [FUHW]
143474
143546
+
Gln
CTG
[ENA]
¡û
>W1910841627
NADW01000028
Bacillota
Bacillus sp. SRB_336 [NADW]
53346
53418
+
Gln
CTG
[ENA]
¡û
>W1911203439
NRGU01000031
Actinomycetota
Glutamicibacter sp. BW78 [NRGU]
209039
208967
-
Gln
CTG
[ENA]
¡û
>W1911719686
QQXL01000001
Actinomycetota
Galactobacter caseinivorans JZ R-183 [QQXL]
778634
778706
+
Gln
CTG
[ENA]
¡û
>W1911719689
QQXL01000001
Actinomycetota
Galactobacter caseinivorans JZ R-183 [QQXL]
779300
779372
+
Gln
CTG
[ENA]
¡û
>W1810167297
PJIJ01000002
Actinomycetota
Arthrobacter sp. ZGTC212 [PJIJ]
1218608
1218536
-
Gln
CTG
[ENA]
¡û
>W1810167476
PJIN01000002
Actinomycetota
Arthrobacter sp. N199823 [PJIN]
449033
449105
+
Gln
CTG
[ENA]
¡û
>W1810167538
PJIO01000003
Actinomycetota
Arthrobacter sp. GMC3 [PJIO]
445422
445350
-
Gln
CTG
[ENA]
¡û
>W1810167724
PJIS01000002
Actinomycetota
Arthrobacter sp. 9E06 [PJIS]
4159
4231
+
Gln
CTG
[ENA]
¡û
>W1810167775
PJIT01000002
Actinomycetota
Arthrobacter sp. 9E18 [PJIT]
4159
4231
+
Gln
CTG
[ENA]
¡û
>W1810167826
PJIU01000002
Actinomycetota
Arthrobacter sp. 9E16 [PJIU]
4159
4231
+
Gln
CTG
[ENA]
¡û
>W1810167907
PJIV01000288
Actinomycetota
Arthrobacter sp. 9E14 [PJIV]
133
61
-
Gln
CTG
[ENA]
¡û
>W1810167979
PJIX01000002
Actinomycetota
Arthrobacter sp. 08Y14 [PJIX]
1274639
1274567
-
Gln
CTG
[ENA]
¡û
>W1810242492
PPXB01000004
Actinomycetota
Arthrobacter glacialis TMN-18 [PPXB]
99907
99835
-
Gln
CTG
[ENA]
¡û
>W1810242540
PPXC01000003
Actinomycetota
Arthrobacter glacialis HLT2-12-2 [PPXC]
16951
16879
-
Gln
CTG
[ENA]
¡û
>W1810627334
QHLZ01000007
Actinomycetota
Arthrobacter psychrochitiniphilus GP3 [QHLZ]
259617
259689
+
Gln
CTG
[ENA]
¡û
>W1810673893
QJVC01000002
Actinomycetota
Arthrobacter psychrolactophilus B7 [QJVC]
71112
71040
-
Gln
CTG
[ENA]
¡û
>W1810673946
QJVD01000004
Actinomycetota
Arthrobacter livingstonensis LI2 [QJVD]
209037
209109
+
Gln
CTG
[ENA]
¡û
>W1810674023
QJVE01000019
Actinomycetota
Arthrobacter stackebrandtii CCM 2783 [QJVE]
49852
49924
+
Gln
CTG
[ENA]
¡û
>C151029513
CP007595
Actinomycetota
Arthrobacter sp. PAMC 25486 [CP007595]
1343871
1343799
-
Gln
CTG
[Ensembl]
¡û
>C151095062
CP012479
Actinomycetota
Arthrobacter sp. ERGS1:01 [CP012479]
2485782
2485710
-
Gln
CTG
-
¡û
>C151097202
CP012677
Actinomycetota
Arthrobacter alpinus R3.8 [CP012677]
2135302
2135230
-
Gln
CTG
-
¡û
>W1511343699
JREV01000064
Actinobacteria
Arthrobacter sp. A3 [JREV] A3 [JREV]
88998
88926
-
Gln
CTG
[ENA]
¡û
>C161052842
CP013200
Actinomycetota
Arthrobacter alpinus ERGS4:06 [CP013200]
1888257
1888329
+
Gln
CTG
[Ensembl]
¡û
>C161060696
CP013745
Actinomycetota
Arthrobacter alpinus A3 [CP013745]
2261495
2261423
-
Gln
CTG
[Ensembl]
¡û
>W1610067325
BCQM01000017
Actinomycetota
Arthrobacter luteolus NBRC 107841 [BCQM]
24603
24531
-
Gln
CTG
[ENA]
¡û
>W1710064698
BCQM01000017
Actinomycetota
Arthrobacter luteolus NBRC 107841 [BCQM]
24603
24531
-
Gln
CTG
[ENA]
¡û
>W1710537449
FNTV01000001
Actinomycetota
Arthrobacter alpinus [FNTV]
493894
493966
+
Gln
CTG
[ENA]
¡û
>W1710695794
LAVU01000120
Gammaproteobacteria
Vibrio vulnificus [LAVU]
314
386
+
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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