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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Actinobacteria
Anticodon = CTT
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.458721 (6 seq.)
>W1711603614
MOME01000045
Actinomycetota
Protofrankia sp. BMG5.30 BMG5.30 [MOME]
8840
8765
-
Lys
CTT
[ENA]
¡û
>WENV183092726
OLLJ01000306
[OLLJ] soil metagenome; soil
1811
1886
+
Lys
CTT
[ENA]
¢þ
>W10114049
ADGT01000032
Actinobacteria
Frankia symbiont of Datisca glomerata [ADGT] of Datisca glomerata [ADGT]
4988
4913
-
Lys
CTT
[ENA]
¡û
>C11109361
CP002801
Actinomycetota
Candidatus Protofrankia datiscae Dg1 [CP002801]
1596261
1596336
+
Lys
CTT
[Ensembl]
¡û
>W11117385
ADGT01000032
Actinobacteria
Frankia symbiont of Datisca glomerata [ADGT] of Datisca glomerata [ADGT]
4988
4913
-
Lys
CTT
[ENA]
¡û
>W1511479838
JWIO01000048
Actinomycetota
Protofrankia coriariae BMG5.1 [JWIO]
47536
47611
+
Lys
CTT
[ENA]
¡û
Identical group No.506540 (22 seq.)
>W1810167480
PJIN01000002
Actinomycetota
Arthrobacter sp. N199823 [PJIN]
398539
398466
-
Lys
CTT
[ENA]
¡û
>W1810167481
PJIN01000002
Actinomycetota
Arthrobacter sp. N199823 [PJIN]
398399
398326
-
Lys
CTT
[ENA]
¡û
>W1810167535
PJIO01000003
Actinomycetota
Arthrobacter sp. GMC3 [PJIO]
483638
483711
+
Lys
CTT
[ENA]
¡û
>W1810167536
PJIO01000003
Actinomycetota
Arthrobacter sp. GMC3 [PJIO]
483781
483854
+
Lys
CTT
[ENA]
¡û
>W1810242488
PPXB01000004
Actinomycetota
Arthrobacter glacialis TMN-18 [PPXB]
150388
150461
+
Lys
CTT
[ENA]
¡û
>W1810242489
PPXB01000004
Actinomycetota
Arthrobacter glacialis TMN-18 [PPXB]
150548
150621
+
Lys
CTT
[ENA]
¡û
>W1810242511
PPXB01000009
Actinomycetota
Arthrobacter glacialis TMN-18 [PPXB]
67999
68074
+
Lys
CTT
[ENA]
¡û
>W1810242534
PPXC01000003
Actinomycetota
Arthrobacter glacialis HLT2-12-2 [PPXC]
67484
67557
+
Lys
CTT
[ENA]
¡û
>W1810242535
PPXC01000003
Actinomycetota
Arthrobacter glacialis HLT2-12-2 [PPXC]
67644
67717
+
Lys
CTT
[ENA]
¡û
>W1810242536
PPXC01000003
Actinomycetota
Arthrobacter glacialis HLT2-12-2 [PPXC]
67804
67877
+
Lys
CTT
[ENA]
¡û
>W1810242570
PPXC01000010
Actinomycetota
Arthrobacter glacialis HLT2-12-2 [PPXC]
79700
79625
-
Lys
CTT
[ENA]
¡û
>W1810673887
QJVC01000002
Actinomycetota
Arthrobacter psychrolactophilus B7 [QJVC]
123094
123169
+
Lys
CTT
[ENA]
¡û
>W1810673888
QJVC01000002
Actinomycetota
Arthrobacter psychrolactophilus B7 [QJVC]
123238
123313
+
Lys
CTT
[ENA]
¡û
>C151095048
CP012479
Actinomycetota
Arthrobacter sp. ERGS1:01 [CP012479]
2518586
2518659
+
Lys
CTT
-
¡û
>W1511343696
JREV01000064
Actinobacteria
Arthrobacter sp. A3 [JREV] A3 [JREV]
150451
150524
+
Lys
CTT
[ENA]
¡û
>W1511343697
JREV01000064
Actinobacteria
Arthrobacter sp. A3 [JREV] A3 [JREV]
150594
150667
+
Lys
CTT
[ENA]
¡û
>C161052868
CP013200
Actinomycetota
Arthrobacter alpinus ERGS4:06 [CP013200]
1843782
1843709
-
Lys
CTT
[Ensembl]
¡û
>C161052869
CP013200
Actinomycetota
Arthrobacter alpinus ERGS4:06 [CP013200]
1843642
1843567
-
Lys
CTT
[Ensembl]
¡û
>C161060672
CP013745
Actinomycetota
Arthrobacter alpinus A3 [CP013745]
2322948
2323021
+
Lys
CTT
[Ensembl]
¡û
>C161060673
CP013745
Actinomycetota
Arthrobacter alpinus A3 [CP013745]
2323091
2323164
+
Lys
CTT
[Ensembl]
¡û
>W1710537493
FNTV01000001
Actinomycetota
Arthrobacter alpinus [FNTV]
436778
436705
-
Lys
CTT
[ENA]
¡û
>W1710537494
FNTV01000001
Actinomycetota
Arthrobacter alpinus [FNTV]
436635
436560
-
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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