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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Actinobacteria
Anticodon = GAG
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.113550 (5 seq.)
>W1711603623
MOME01000077
Actinomycetota
Protofrankia sp. BMG5.30 BMG5.30 [MOME]
9219
9303
+
Leu
GAG
[ENA]
¡û
>W10114053
ADGT01000040
Actinobacteria
Frankia symbiont of Datisca glomerata [ADGT] of Datisca glomerata [ADGT]
45385
45471
+
Leu
GAG
[ENA]
¡û
>C11109367
CP002801
Actinomycetota
Candidatus Protofrankia datiscae Dg1 [CP002801]
3237334
3237420
+
Leu
GAG
[Ensembl]
¡û
>W11117389
ADGT01000040
Actinobacteria
Frankia symbiont of Datisca glomerata [ADGT] of Datisca glomerata [ADGT]
45385
45471
+
Leu
GAG
[ENA]
¡û
>W1511479840
JWIO01000050
Actinomycetota
Protofrankia coriariae BMG5.1 [JWIO]
57983
58067
+
Leu
GAG
[ENA]
¡û
Identical group No.160489 (11 seq.)
>W1810167491
PJIN01000004
Actinomycetota
Arthrobacter sp. N199823 [PJIN]
183323
183406
+
Leu
GAG
[ENA]
¡û
>W1810167556
PJIO01000010
Actinomycetota
Arthrobacter sp. GMC3 [PJIO]
17743
17660
-
Leu
GAG
[ENA]
¡û
>W1810242507
PPXB01000007
Actinomycetota
Arthrobacter glacialis TMN-18 [PPXB]
75459
75542
+
Leu
GAG
[ENA]
¡û
>W1810242559
PPXC01000007
Actinomycetota
Arthrobacter glacialis HLT2-12-2 [PPXC]
75883
75966
+
Leu
GAG
[ENA]
¡û
>W1810673927
QJVC01000020
Actinomycetota
Arthrobacter psychrolactophilus B7 [QJVC]
59079
59162
+
Leu
GAG
[ENA]
¡û
>W1810673928
QJVC01000020
Actinomycetota
Arthrobacter psychrolactophilus B7 [QJVC]
59385
59468
+
Leu
GAG
[ENA]
¡û
>C151097208
CP012677
Actinomycetota
Arthrobacter alpinus R3.8 [CP012677]
1562605
1562520
-
Leu
GAG
-
¡û
>W1511343686
JREV01000044
Actinobacteria
Arthrobacter sp. A3 [JREV] A3 [JREV]
7956
7873
-
Leu
GAG
[ENA]
¡û
>C161052865
CP013200
Actinomycetota
Arthrobacter alpinus ERGS4:06 [CP013200]
2588495
2588412
-
Leu
GAG
[Ensembl]
¡û
>C161060710
CP013745
Actinomycetota
Arthrobacter alpinus A3 [CP013745]
1246007
1245924
-
Leu
GAG
[Ensembl]
¡û
>W1710537463
FNTV01000001
Actinomycetota
Arthrobacter alpinus [FNTV]
1514044
1514127
+
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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