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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Actinobacteria
Anticodon = GCA
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.656142 (60 seq.)
>W1710783831
LJFZ01000024
Actinomycetota
Frankia sp. AvcI1 [LJFZ]
87206
87134
-
Cys
GCA
[ENA]
¡û
>W1710787559
LJJX01000005
Actinomycetota
Frankia sp. CpI1-P [LJJX]
186501
186573
+
Cys
GCA
[ENA]
¡û
>W1710793202
LJPA01000005
Actinomycetota
Frankia sp. ACN1ag [LJPA]
85254
85182
-
Cys
GCA
[ENA]
¡û
>W1711053899
LRTJ01000010
Actinomycetota
Frankia casuarinae BR [LRTJ]
2030
1958
-
Cys
GCA
[ENA]
¡û
>W1711053933
LRTK01000005
Actinomycetota
Frankia sp. EI5c [LRTK]
271712
271784
+
Cys
GCA
[ENA]
¡û
>W1711309678
MAQZ01000125
Actinomycetota
Frankia sp. CgIM4 [MAQZ]
206242
206314
+
Cys
GCA
[ENA]
¡û
>W1711317111
MAXA01000113
Actinomycetota
Parafrankia soli NRRL B-16219 [MAXA]
217713
217641
-
Cys
GCA
[ENA]
¡û
>W1711328824
MBLM01000036
Actinomycetota
Parafrankia colletiae Cc1.17 [MBLM]
159517
159589
+
Cys
GCA
[ENA]
¡û
>W1711328986
MBLP01000001
Actinomycetota
Frankia sp. CgIS1 [MBLP]
23843
23771
-
Cys
GCA
[ENA]
¡û
>W1711505793
MKVV01000070
Actinomycetota
Pseudonocardia sp. 73-21 [MKVV]
48123
48051
-
Cys
GCA
[ENA]
¡û
>W1711603552
MOMD01000005
Actinomycetota
Frankia sp. CcI156 [MOMD]
23835
23763
-
Cys
GCA
[ENA]
¡û
>W1711603604
MOME01000022
Actinomycetota
Protofrankia sp. BMG5.30 BMG5.30 [MOME]
36821
36749
-
Cys
GCA
[ENA]
¡û
>W1711612424
MOWP01000004
Actinomycetota
Frankia sp. CcI49 [MOWP]
346405
346333
-
Cys
GCA
[ENA]
¡û
>W1711678702
MRUJ01000253
Actinomycetota
Frankia sp. KB5 [MRUJ]
3117
3189
+
Cys
GCA
[ENA]
¡û
>W1711689403
MSEA01000245
Actinomycetota
Frankia casuarinae Cg70.9 [MSEA]
23385
23313
-
Cys
GCA
[ENA]
¡û
>W131165109
ARBI01000001
Actinomycetota
Actinomycetospora chiangmaiensis DSM 45062 [ARBI]
9323
9251
-
Cys
GCA
[ENA]
¡û
>W131168018
ARDT01000002
Actinomycetota
Parafrankia discariae BCU110501 [ARDT]
332160
332232
+
Cys
GCA
[ENA]
¡û
>W131170091
ARFH01000002
Actinomycetota
Parafrankia elaeagni BMG5.12 [ARFH]
205075
205003
-
Cys
GCA
[ENA]
¡û
>W131222580
AUBJ01000010
Actinomycetota
Actinoalloteichus caeruleus DSM 43889 [AUBJ]
260698
260770
+
Cys
GCA
[ENA]
¡û
>C009376
CT573213
Actinomycetota
Frankia alni ACN14a [CT573213]
2322381
2322310
-
Cys
GCA
[Ensembl]
¡û
>C009574
CP000249
Actinomycetota
Frankia casuarinae CcI3 [CP000249]
1630868
1630797
-
Cys
GCA
[Ensembl]
¡û
>w007132
AAII01000123
Actinomycetota
Frankia sp. EAN1pec [AAII]
3365
3439
+
Cys
GCA
[ENA]
¡û
>W141195303
AYTZ01000020
Actinomycetota
Frankia sp. CcI6 [AYTZ]
24002
23930
-
Cys
GCA
[ENA]
¡û
>C08005071
CP000820
Actinomycetota
Frankia sp. EAN1pec EAN1.pec [CP000820]
6184531
6184603
+
Cys
GCA
[Ensembl]
¡û
>W141403430
JDWE01000007
Actinomycetota
Frankia sp. BMG5.23 [JDWE]
23871
23799
-
Cys
GCA
[ENA]
¡û
>W141427353
JENI01000007
Actinomycetota
Frankia casuarinae Thr [JENI]
64453
64381
-
Cys
GCA
[ENA]
¡û
>C181124965
CP025990
Actinomycetota
Actinoalloteichus sp. AHMU CJ021 [CP025990]
1160123
1160051
-
Cys
GCA
-
¡û
>W09102682
AAIE01000002
Actinomycetota
Frankia casuarinae CcI3 [AAIE]
92230
92302
+
Cys
GCA
[ENA]
¡û
>W141758003
JNYI01000126
Actinomycetota
Goodfellowiella coeruleoviolacea [JNYI]
22752
22680
-
Cys
GCA
[ENA]
¡û
>W141761057
JOAL01001096
Actinomycetota
Actinoalloteichus caeruleus cyanogriseus [JOAL]
46
118
+
Cys
GCA
[ENA]
¡û
>W141766201
JODV01000003
Actinomycetota
Actinoalloteichus caeruleus cyanogriseus [JODV]
260522
260594
+
Cys
GCA
[ENA]
¡û
>W141803577
JPGU01000004
Actinomycetota
Frankia sp. CeD [JPGU]
151399
151471
+
Cys
GCA
[ENA]
¡û
>W141804404
JPHT01000023
Actinomycetota
Frankia sp. Allo2 [JPHT]
20102
20174
+
Cys
GCA
[ENA]
¡û
>W1910179049
BJFL01000002
Actinomycetota
Gandjariella thermophila UICC B-83 SL3-2-4 [BJFL]
11898
11826
-
Cys
GCA
[ENA]
¡û
>W1910546359
FZMO01000531
Actinomycetota
Frankia canadensis ARgP5 [FZMO]
716
788
+
Cys
GCA
[ENA]
¡û
>W1911504324
OESX01000531
Actinomycetota
Frankia canadensis ARgP5 [OESX]
716
788
+
Cys
GCA
[ENA]
¡û
>W10111558
ADDL01000073
Actinomycetota
Pseudofrankia inefficax EuI1c [ADDL]
13010
13082
+
Cys
GCA
[ENA]
¡û
>W10114034
ADGT01000008
Actinobacteria
Frankia symbiont of Datisca glomerata [ADGT] of Datisca glomerata [ADGT]
57358
57430
+
Cys
GCA
[ENA]
¡û
>W10114200
ADGX01000164
Actinomycetota
Parafrankia sp. EUN1f EUN1f [ADGX]
7314
7242
-
Cys
GCA
[ENA]
¡û
>C11109203
CP002299
Actinomycetota
Pseudofrankia inefficax EuI1c [CP002299]
2842660
2842732
+
Cys
GCA
[Ensembl]
¡û
>C11109365
CP002801
Actinomycetota
Candidatus Protofrankia datiscae Dg1 [CP002801]
3046309
3046381
+
Cys
GCA
[Ensembl]
¡û
>W11114485
ADDL01000073
Actinomycetota
Pseudofrankia inefficax EuI1c [ADDL]
13010
13082
+
Cys
GCA
[ENA]
¡û
>W11117370
ADGT01000008
Actinobacteria
Frankia symbiont of Datisca glomerata [ADGT] of Datisca glomerata [ADGT]
57358
57430
+
Cys
GCA
[ENA]
¡û
>W11117536
ADGX01000164
Actinomycetota
Parafrankia sp. EUN1f EUN1f [ADGX]
7314
7242
-
Cys
GCA
[ENA]
¡û
>W1511479818
JWIO01000014
Actinomycetota
Protofrankia coriariae BMG5.1 [JWIO]
44085
44157
+
Cys
GCA
[ENA]
¡û
>W1511524718
JYFN01000004
Actinomycetota
Frankia torreyi CpI1-S [JYFN]
39019
38947
-
Cys
GCA
[ENA]
¡û
>W121010807
AGJN01000160
Actinomycetota
Pseudofrankia saprophytica CN3 [AGJN]
1386
1458
+
Cys
GCA
[ENA]
¡û
>W121021616
AGVX02000298
Actinomycetota
Actinoalloteichus spitiensis RMV-1378 [AGVX]
14560
14488
-
Cys
GCA
[ENA]
¡û
>W121069955
AJWA01000050
Actinomycetota
Frankia sp. QA3 [AJWA]
80249
80321
+
Cys
GCA
[ENA]
¡û
>W1610163580
FAOZ01000006
Actinomycetota
Parafrankia irregularis DSM 45899 [FAOZ]
51741
51813
+
Cys
GCA
[ENA]
¡û
>W1610507949
FLUV01001680
Actinomycetota
Candidatus Protofrankia californiensis sp. [FLUV]
1224
1296
+
Cys
GCA
[ENA]
¡û
>W1610597112
LFCW01000002
Actinomycetota
Frankia sp. R43 [LFCW]
465864
465792
-
Cys
GCA
[ENA]
¡û
>W1610648339
LJFZ01000024
Actinomycetota
Frankia sp. AvcI1 [LJFZ]
87206
87134
-
Cys
GCA
[ENA]
¡û
>W1610651414
LJJX01000005
Actinomycetota
Frankia sp. CpI1-P [LJJX]
186501
186573
+
Cys
GCA
[ENA]
¡û
>W1610657206
LJPA01000005
Actinomycetota
Frankia sp. ACN1ag [LJPA]
85254
85182
-
Cys
GCA
[ENA]
¡û
>W1610895087
LRTJ01000010
Actinomycetota
Frankia casuarinae BR [LRTJ]
2030
1958
-
Cys
GCA
[ENA]
¡û
>W1610895121
LRTK01000005
Actinomycetota
Frankia sp. EI5c [LRTK]
271712
271784
+
Cys
GCA
[ENA]
¡û
>W1710165247
FAOZ01000006
Actinomycetota
Parafrankia irregularis DSM 45899 [FAOZ]
51741
51813
+
Cys
GCA
[ENA]
¡û
>W1710514745
FNBE01000019
Actinomycetota
Pseudonocardia oroxyli [FNBE]
47720
47792
+
Cys
GCA
[ENA]
¡û
>W1710718271
LFCW01000002
Actinomycetota
Frankia sp. R43 [LFCW]
465864
465792
-
Cys
GCA
[ENA]
¡û
Identical group No.794193 (12 seq.)
>W1810167506
PJIN01000010
Actinomycetota
Arthrobacter sp. N199823 [PJIN]
80277
80350
+
Cys
GCA
[ENA]
¡û
>W1810242514
PPXB01000014
Actinomycetota
Arthrobacter glacialis TMN-18 [PPXB]
74333
74406
+
Cys
GCA
[ENA]
¡û
>W1810242562
PPXC01000008
Actinomycetota
Arthrobacter glacialis HLT2-12-2 [PPXC]
128958
128885
-
Cys
GCA
[ENA]
¡û
>W1810627320
QHLZ01000005
Actinomycetota
Arthrobacter psychrochitiniphilus GP3 [QHLZ]
267389
267462
+
Cys
GCA
[ENA]
¡û
>W1810673904
QJVC01000009
Actinomycetota
Arthrobacter psychrolactophilus B7 [QJVC]
72597
72670
+
Cys
GCA
[ENA]
¡û
>W1810674005
QJVE01000004
Actinomycetota
Arthrobacter stackebrandtii CCM 2783 [QJVE]
232651
232724
+
Cys
GCA
[ENA]
¡û
>C151029473
CP007595
Actinomycetota
Arthrobacter sp. PAMC 25486 [CP007595]
289433
289506
+
Cys
GCA
[Ensembl]
¡û
>C151097170
CP012677
Actinomycetota
Arthrobacter alpinus R3.8 [CP012677]
1244482
1244555
+
Cys
GCA
-
¡û
>W1511343661
JREV01000008
Actinobacteria
Arthrobacter sp. A3 [JREV] A3 [JREV]
26057
26130
+
Cys
GCA
[ENA]
¡û
>C161052859
CP013200
Actinomycetota
Arthrobacter alpinus ERGS4:06 [CP013200]
3063576
3063503
-
Cys
GCA
[Ensembl]
¡û
>C161060704
CP013745
Actinomycetota
Arthrobacter alpinus A3 [CP013745]
1769996
1769923
-
Cys
GCA
[Ensembl]
¡û
>W1710537457
FNTV01000001
Actinomycetota
Arthrobacter alpinus [FNTV]
1069818
1069891
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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