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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Actinobacteria
Anticodon = GCT
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.29704 (3 seq.)
>W10114065
ADGT01000075
Actinobacteria
Frankia symbiont of Datisca glomerata [ADGT] of Datisca glomerata [ADGT]
2880
2969
+
Ser
GCT
[ENA]
¡û
>C11109394
CP002801
Actinomycetota
Candidatus Protofrankia datiscae Dg1 [CP002801]
132505
132416
-
Ser
GCT
[Ensembl]
¡û
>W11117401
ADGT01000075
Actinobacteria
Frankia symbiont of Datisca glomerata [ADGT] of Datisca glomerata [ADGT]
2880
2969
+
Ser
GCT
[ENA]
¡û
Identical group No.34544 (11 seq.)
>PL171000860
CP012477
Actinobacteria
Arthrobacter sp. ERGS1:01 plasmid:unnamed2
545333
545245
-
Ser
GCT
[ENA]
¡û
>W1810167494
PJIN01000005
Actinomycetota
Arthrobacter sp. N199823 [PJIN]
60150
60238
+
Ser
GCT
[ENA]
¡û
>W1810167529
PJIO01000002
Actinomycetota
Arthrobacter sp. GMC3 [PJIO]
512005
511917
-
Ser
GCT
[ENA]
¡û
>W1810242476
PPXB01000001
Actinomycetota
Arthrobacter glacialis TMN-18 [PPXB]
417059
416971
-
Ser
GCT
[ENA]
¡û
>W1810242527
PPXC01000001
Actinomycetota
Arthrobacter glacialis HLT2-12-2 [PPXC]
469449
469361
-
Ser
GCT
[ENA]
¡û
>W1810673924
QJVC01000015
Actinomycetota
Arthrobacter psychrolactophilus B7 [QJVC]
29548
29460
-
Ser
GCT
[ENA]
¡û
>C151097192
CP012677
Actinomycetota
Arthrobacter alpinus R3.8 [CP012677]
4026152
4026064
-
Ser
GCT
-
¡û
>W1511343683
JREV01000043
Actinobacteria
Arthrobacter sp. A3 [JREV] A3 [JREV]
21842
21930
+
Ser
GCT
[ENA]
¡û
>C161052825
CP013200
Actinomycetota
Arthrobacter alpinus ERGS4:06 [CP013200]
87259
87347
+
Ser
GCT
[Ensembl]
¡û
>C161060680
CP013745
Actinomycetota
Arthrobacter alpinus A3 [CP013745]
4203148
4203060
-
Ser
GCT
[Ensembl]
¡û
>W1710537467
FNTV01000001
Actinomycetota
Arthrobacter alpinus [FNTV]
2839438
2839526
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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