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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Actinobacteria
Anticodon = GTA
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.181140 (5 seq.)
>W1711603593
MOME01000013
Actinomycetota
Protofrankia sp. BMG5.30 BMG5.30 [MOME]
204974
204890
-
Tyr
GTA
[ENA]
¡û
>W10114037
ADGT01000009
Actinobacteria
Frankia symbiont of Datisca glomerata [ADGT] of Datisca glomerata [ADGT]
11649
11565
-
Tyr
GTA
[ENA]
¡û
>C11109373
CP002801
Actinomycetota
Candidatus Protofrankia datiscae Dg1 [CP002801]
4672661
4672577
-
Tyr
GTA
[Ensembl]
¡û
>W11117373
ADGT01000009
Actinobacteria
Frankia symbiont of Datisca glomerata [ADGT] of Datisca glomerata [ADGT]
11649
11565
-
Tyr
GTA
[ENA]
¡û
>W1511479807
JWIO01000003
Actinomycetota
Protofrankia coriariae BMG5.1 [JWIO]
97443
97527
+
Tyr
GTA
[ENA]
¡û
Identical group No.190337 (19 seq.)
>W1711603192
MOLR01000001
Actinomycetota
Arthrobacter sp. UCD-GKA [MOLR]
311208
311292
+
Tyr
GTA
[ENA]
¡û
>C191100393
CP033081
Actinomycetota
Glutamicibacter nicotianae OTC-16 [CP033081]
2552718
2552636
-
Tyr
GTA
-
¡û
>W1810167274
PJIJ01000001
Actinomycetota
Arthrobacter sp. ZGTC212 [PJIJ]
849353
849436
+
Tyr
GTA
[ENA]
¡û
>W1810167487
PJIN01000003
Actinomycetota
Arthrobacter sp. N199823 [PJIN]
384202
384286
+
Tyr
GTA
[ENA]
¡û
>W1810167517
PJIO01000001
Actinomycetota
Arthrobacter sp. GMC3 [PJIO]
377295
377379
+
Tyr
GTA
[ENA]
¡û
>W1810167720
PJIS01000001
Actinomycetota
Arthrobacter sp. 9E06 [PJIS]
527072
526989
-
Tyr
GTA
[ENA]
¡û
>W1810167771
PJIT01000001
Actinomycetota
Arthrobacter sp. 9E18 [PJIT]
527072
526989
-
Tyr
GTA
[ENA]
¡û
>W1810167822
PJIU01000001
Actinomycetota
Arthrobacter sp. 9E16 [PJIU]
527072
526989
-
Tyr
GTA
[ENA]
¡û
>W1810167969
PJIX01000001
Actinomycetota
Arthrobacter sp. 08Y14 [PJIX]
515606
515523
-
Tyr
GTA
[ENA]
¡û
>W1810242524
PPXB01000021
Actinomycetota
Arthrobacter glacialis TMN-18 [PPXB]
19248
19164
-
Tyr
GTA
[ENA]
¡û
>W1810242543
PPXC01000004
Actinomycetota
Arthrobacter glacialis HLT2-12-2 [PPXC]
234897
234813
-
Tyr
GTA
[ENA]
¡û
>W1810673884
QJVC01000001
Actinomycetota
Arthrobacter psychrolactophilus B7 [QJVC]
379741
379825
+
Tyr
GTA
[ENA]
¡û
>C151097195
CP012677
Actinomycetota
Arthrobacter alpinus R3.8 [CP012677]
2944046
2943962
-
Tyr
GTA
-
¡û
>W1511343687
JREV01000045
Actinobacteria
Arthrobacter sp. A3 [JREV] A3 [JREV]
90456
90538
+
Tyr
GTA
[ENA]
¡û
>C161052835
CP013200
Actinomycetota
Arthrobacter alpinus ERGS4:06 [CP013200]
1070970
1071054
+
Tyr
GTA
[Ensembl]
¡û
>C161060689
CP013745
Actinomycetota
Arthrobacter alpinus A3 [CP013745]
3144528
3144446
-
Tyr
GTA
[Ensembl]
¡û
>W1610112268
CZJT01000056
Actinomycetota
Paeniglutamicibacter antarcticus [CZJT]
53406
53490
+
Tyr
GTA
[ENA]
¡û
>W1710114972
CZJT01000056
Actinomycetota
Paeniglutamicibacter antarcticus [CZJT]
53406
53490
+
Tyr
GTA
[ENA]
¡û
>W1710537476
FNTV01000001
Actinomycetota
Arthrobacter alpinus [FNTV]
3866816
3866898
+
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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