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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Actinobacteria
Anticodon = GTG
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.458720 (17 seq.)
>W1711603613
MOME01000041
Actinomycetota
Protofrankia sp. BMG5.30 BMG5.30 [MOME]
36249
36176
-
His
GTG
[ENA]
¡û
>WENV180284552
OBID01057641
[OBID] metagenome; sludge
76
1
-
His
GTG
[ENA]
¢þ
>WENV180691269
OCZS010088496
[OCZS] soil metagenome; soil
140
65
-
His
GTG
[ENA]
¢þ
>WENV181188921
OEOE01481255
[OEOE] activated sludge metagenome; Activated Sludge
68
143
+
His
GTG
[ENA]
¢þ
>WENV181189740
OEOF01188975
[OEOF] activated sludge metagenome; Activated Sludge
132
57
-
His
GTG
[ENA]
¢þ
>WENV181297789
OFHK01134551
[OFHK] soil metagenome; Clay
332
257
-
His
GTG
[ENA]
¢þ
>WENV170009877
APMI01004434
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
3512
3437
-
His
GTG
[ENA]
¢þ
>WENV170010213
APMI01010889
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
2905
2830
-
His
GTG
[ENA]
¢þ
>WENV170011255
APMI01052437
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
214
289
+
His
GTG
[ENA]
¢þ
>WENV170973919
MTKY01051824
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
2348
2273
-
His
GTG
[ENA]
¢þ
>WENV170978144
MTKZ01041703
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
2139
2214
+
His
GTG
[ENA]
¢þ
>C181198592
CP031264
Actinomycetota
Peterkaempfera bronchialis DSM 106435 [CP031264]
2215234
2215309
+
His
GTG
-
¡û
>W10114050
ADGT01000036
Actinobacteria
Frankia symbiont of Datisca glomerata [ADGT] of Datisca glomerata [ADGT]
23151
23224
+
His
GTG
[ENA]
¡û
>C11109386
CP002801
Actinomycetota
Candidatus Protofrankia datiscae Dg1 [CP002801]
1694083
1694010
-
His
GTG
[Ensembl]
¡û
>W11117386
ADGT01000036
Actinobacteria
Frankia symbiont of Datisca glomerata [ADGT] of Datisca glomerata [ADGT]
23151
23224
+
His
GTG
[ENA]
¡û
>W1511479825
JWIO01000017
Actinomycetota
Protofrankia coriariae BMG5.1 [JWIO]
53223
53296
+
His
GTG
[ENA]
¡û
>W1610507941
FLUV01000889
Actinomycetota
Candidatus Protofrankia californiensis sp. [FLUV]
75
1
-
His
GTG
[ENA]
¡û
Identical group No.507351 (3 seq.)
>W1511343672
JREV01000024
Actinobacteria
Arthrobacter sp. A3 [JREV] A3 [JREV]
29963
29888
-
His
GTG
[ENA]
¡û
>C161060671
CP013745
Actinomycetota
Arthrobacter alpinus A3 [CP013745]
2120331
2120406
+
His
GTG
[Ensembl]
¡û
>W1710537492
FNTV01000001
Actinomycetota
Arthrobacter alpinus [FNTV]
632309
632234
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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