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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Actinobacteria
Anticodon = TAA
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.241327 (6 seq.)
>W1530026309
JWIO01000001
Actinomycetota
Protofrankia coriariae BMG5.1 [JWIO]
203961
203886
-
Leu
TAA
[ENA]
¡û
>W10300384
ADGT01000055
Actinobacteria
Frankia symbiont of Datisca glomerata [ADGT] of Datisca glomerata [ADGT]
27700
27625
-
Leu
TAA
[ENA]
¡û
>C11300219
CP002801
Actinomycetota
Candidatus Protofrankia datiscae Dg1 [CP002801]
899635
899710
+
Leu
TAA
[Ensembl]
¡û
>W11300485
ADGT01000055
Actinobacteria
Frankia symbiont of Datisca glomerata [ADGT] of Datisca glomerata [ADGT]
27700
27625
-
Leu
TAA
[ENA]
¡û
>W1630009033
FLUV01000492
Actinomycetota
Candidatus Protofrankia californiensis sp. [FLUV]
646
721
+
Leu
TAA
[ENA]
¡û
>W1730032484
MOME01000004
Actinomycetota
Protofrankia sp. BMG5.30 BMG5.30 [MOME]
123466
123391
-
Leu
TAA
[ENA]
¡û
Identical group No.507349 (10 seq.)
>W141213419
AZRZ01000026
Actinomycetota
Arthrobacter sp. H41 [AZRZ]
6186
6261
+
Leu
TAA
[ENA]
¡û
>W141213486
AZSA01000161
Actinomycetota
Arthrobacter sp. Br18 [AZSA]
3564
3489
-
Leu
TAA
[ENA]
¡û
>W1911823708
QZVU01000003
Actinomycetota
Arthrobacter frigidicola MDT2-14 [QZVU]
355854
355779
-
Leu
TAA
[ENA]
¡û
>W1810167467
PJIN01000001
Actinomycetota
Arthrobacter sp. N199823 [PJIN]
381359
381432
+
Leu
TAA
[ENA]
¡û
>W1810167551
PJIO01000008
Actinomycetota
Arthrobacter sp. GMC3 [PJIO]
189498
189423
-
Leu
TAA
[ENA]
¡û
>W1810242487
PPXB01000003
Actinomycetota
Arthrobacter glacialis TMN-18 [PPXB]
1673
1599
-
Leu
TAA
[ENA]
¡û
>W1810242532
PPXC01000002
Actinomycetota
Arthrobacter glacialis HLT2-12-2 [PPXC]
92625
92699
+
Leu
TAA
[ENA]
¡û
>W1511343676
JREV01000037
Actinobacteria
Arthrobacter sp. A3 [JREV] A3 [JREV]
138159
138084
-
Leu
TAA
[ENA]
¡û
>C161060663
CP013745
Actinomycetota
Arthrobacter alpinus A3 [CP013745]
471552
471627
+
Leu
TAA
[Ensembl]
¡û
>W1710537484
FNTV01000001
Actinomycetota
Arthrobacter alpinus [FNTV]
2282039
2281964
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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