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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Actinobacteria
Anticodon = TAG
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.185453 (17 seq.)
>C181182539
CP029642
Actinomycetota
Arthrobacter dokdonellae [CP029642]
3483200
3483118
-
Leu
TAG
-
¡û
>W1910841626
NADW01000028
Bacillota
Bacillus sp. SRB_336 [NADW]
13895
13977
+
Leu
TAG
[ENA]
¡û
>W1810167475
PJIN01000002
Actinomycetota
Arthrobacter sp. N199823 [PJIN]
396761
396843
+
Leu
TAG
[ENA]
¡û
>W1810167537
PJIO01000003
Actinomycetota
Arthrobacter sp. GMC3 [PJIO]
484604
484522
-
Leu
TAG
[ENA]
¡û
>W1810242491
PPXB01000004
Actinomycetota
Arthrobacter glacialis TMN-18 [PPXB]
151688
151604
-
Leu
TAG
[ENA]
¡û
>W1810242539
PPXC01000003
Actinomycetota
Arthrobacter glacialis HLT2-12-2 [PPXC]
68943
68859
-
Leu
TAG
[ENA]
¡û
>W1810627333
QHLZ01000007
Actinomycetota
Arthrobacter psychrochitiniphilus GP3 [QHLZ]
226447
226529
+
Leu
TAG
[ENA]
¡û
>W1810673892
QJVC01000002
Actinomycetota
Arthrobacter psychrolactophilus B7 [QJVC]
125165
125083
-
Leu
TAG
[ENA]
¡û
>W1810673945
QJVD01000004
Actinomycetota
Arthrobacter livingstonensis LI2 [QJVD]
171135
171217
+
Leu
TAG
[ENA]
¡û
>W1810674011
QJVE01000006
Actinomycetota
Arthrobacter stackebrandtii CCM 2783 [QJVE]
213890
213972
+
Leu
TAG
[ENA]
¡û
>C151029512
CP007595
Actinomycetota
Arthrobacter sp. PAMC 25486 [CP007595]
1412386
1412304
-
Leu
TAG
[Ensembl]
¡û
>C151095061
CP012479
Actinomycetota
Arthrobacter sp. ERGS1:01 [CP012479]
2519434
2519350
-
Leu
TAG
-
¡û
>C151097201
CP012677
Actinomycetota
Arthrobacter alpinus R3.8 [CP012677]
2178115
2178031
-
Leu
TAG
-
¡û
>W1511343698
JREV01000064
Actinobacteria
Arthrobacter sp. A3 [JREV] A3 [JREV]
188322
188238
-
Leu
TAG
[ENA]
¡û
>C161052841
CP013200
Actinomycetota
Arthrobacter alpinus ERGS4:06 [CP013200]
1842479
1842563
+
Leu
TAG
[Ensembl]
¡û
>C161060695
CP013745
Actinomycetota
Arthrobacter alpinus A3 [CP013745]
2360819
2360735
-
Leu
TAG
[Ensembl]
¡û
>W1710537448
FNTV01000001
Actinomycetota
Arthrobacter alpinus [FNTV]
434007
434091
+
Leu
TAG
[ENA]
¡û
Identical group No.218301 (21 seq.)
>W1711053914
LRTJ01000044
Actinomycetota
Frankia casuarinae BR [LRTJ]
78269
78352
+
Leu
TAG
[ENA]
¡û
>W1711309649
MAQZ01000050
Actinomycetota
Frankia sp. CgIM4 [MAQZ]
32833
32750
-
Leu
TAG
[ENA]
¡û
>W1711309659
MAQZ01000067
Actinomycetota
Frankia sp. CgIM4 [MAQZ]
24052
24135
+
Leu
TAG
[ENA]
¡û
>W1711328997
MBLP01000050
Actinomycetota
Frankia sp. CgIS1 [MBLP]
25813
25730
-
Leu
TAG
[ENA]
¡û
>W1711603570
MOMD01000031
Actinomycetota
Frankia sp. CcI156 [MOMD]
24015
24098
+
Leu
TAG
[ENA]
¡û
>W1711603606
MOME01000024
Actinomycetota
Protofrankia sp. BMG5.30 BMG5.30 [MOME]
68575
68494
-
Leu
TAG
[ENA]
¡û
>W1711678669
MRUJ01000011
Actinomycetota
Frankia sp. KB5 [MRUJ]
11330
11247
-
Leu
TAG
[ENA]
¡û
>W1711689421
MSEA01000487
Actinomycetota
Frankia casuarinae Cg70.9 [MSEA]
5293
5210
-
Leu
TAG
[ENA]
¡û
>W1711689424
MSEA01000587
Actinomycetota
Frankia casuarinae Cg70.9 [MSEA]
1345
1428
+
Leu
TAG
[ENA]
¡û
>C009580
CP000249
Actinomycetota
Frankia casuarinae CcI3 [CP000249]
1055097
1055014
-
Leu
TAG
[Ensembl]
¡û
>W141195306
AYTZ01000022
Actinomycetota
Frankia sp. CcI6 [AYTZ]
72970
73053
+
Leu
TAG
[ENA]
¡û
>W141403437
JDWE01000012
Actinomycetota
Frankia sp. BMG5.23 [JDWE]
44584
44667
+
Leu
TAG
[ENA]
¡û
>W141427361
JENI01000014
Actinomycetota
Frankia casuarinae Thr [JENI]
28064
27981
-
Leu
TAG
[ENA]
¡û
>W09102715
AAIE01000049
Actinomycetota
Frankia casuarinae CcI3 [AAIE]
28420
28337
-
Leu
TAG
[ENA]
¡û
>W141803563
JPGU01000001
Actinomycetota
Frankia sp. CeD [JPGU]
136432
136515
+
Leu
TAG
[ENA]
¡û
>W141804392
JPHT01000008
Actinomycetota
Frankia sp. Allo2 [JPHT]
25893
25810
-
Leu
TAG
[ENA]
¡û
>W10114069
ADGT01000089
Actinobacteria
Frankia symbiont of Datisca glomerata [ADGT] of Datisca glomerata [ADGT]
946
1029
+
Leu
TAG
[ENA]
¡û
>C11109387
CP002801
Actinomycetota
Candidatus Protofrankia datiscae Dg1 [CP002801]
1501901
1501818
-
Leu
TAG
[Ensembl]
¡û
>W11117405
ADGT01000089
Actinobacteria
Frankia symbiont of Datisca glomerata [ADGT] of Datisca glomerata [ADGT]
946
1029
+
Leu
TAG
[ENA]
¡û
>W1511479826
JWIO01000019
Actinomycetota
Protofrankia coriariae BMG5.1 [JWIO]
18594
18675
+
Leu
TAG
[ENA]
¡û
>W1610895102
LRTJ01000044
Actinomycetota
Frankia casuarinae BR [LRTJ]
78269
78352
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK