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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Actinobacteria
Anticodon = TCT
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.458716 (8 seq.)
>W1711603598
MOME01000016
Actinomycetota
Protofrankia sp. BMG5.30 BMG5.30 [MOME]
114475
114550
+
Arg
TCT
[ENA]
¡û
>W10114060
ADGT01000059
Actinobacteria
Frankia symbiont of Datisca glomerata [ADGT] of Datisca glomerata [ADGT]
19381
19456
+
Arg
TCT
[ENA]
¡û
>W10114184
ADGX01000053
Actinomycetota
Parafrankia sp. EUN1f EUN1f [ADGX]
24219
24144
-
Arg
TCT
[ENA]
¡û
>C11109385
CP002801
Actinomycetota
Candidatus Protofrankia datiscae Dg1 [CP002801]
1731128
1731053
-
Arg
TCT
[Ensembl]
¡û
>W11117396
ADGT01000059
Actinobacteria
Frankia symbiont of Datisca glomerata [ADGT] of Datisca glomerata [ADGT]
19381
19456
+
Arg
TCT
[ENA]
¡û
>W11117520
ADGX01000053
Actinomycetota
Parafrankia sp. EUN1f EUN1f [ADGX]
24219
24144
-
Arg
TCT
[ENA]
¡û
>W1511479821
JWIO01000014
Actinomycetota
Protofrankia coriariae BMG5.1 [JWIO]
198806
198881
+
Arg
TCT
[ENA]
¡û
>W1610507942
FLUV01000906
Actinomycetota
Candidatus Protofrankia californiensis sp. [FLUV]
2691
2618
-
Arg
TCT
[ENA]
¡û
Identical group No.481125 (12 seq.)
>C181182530
CP029642
Actinomycetota
Arthrobacter dokdonellae [CP029642]
2799851
2799926
+
Arg
TCT
-
¡û
>W1810167503
PJIN01000007
Actinomycetota
Arthrobacter sp. N199823 [PJIN]
46555
46480
-
Arg
TCT
[ENA]
¡û
>W1810167533
PJIO01000003
Actinomycetota
Arthrobacter sp. GMC3 [PJIO]
195492
195567
+
Arg
TCT
[ENA]
¡û
>W1810242557
PPXC01000006
Actinomycetota
Arthrobacter glacialis HLT2-12-2 [PPXC]
115110
115037
-
Arg
TCT
[ENA]
¡û
>W1810627332
QHLZ01000006
Actinomycetota
Arthrobacter psychrochitiniphilus GP3 [QHLZ]
68505
68430
-
Arg
TCT
[ENA]
¡û
>W1810673914
QJVC01000011
Actinomycetota
Arthrobacter psychrolactophilus B7 [QJVC]
88366
88439
+
Arg
TCT
[ENA]
¡û
>W1810673978
QJVD01000021
Actinomycetota
Arthrobacter livingstonensis LI2 [QJVD]
67809
67734
-
Arg
TCT
[ENA]
¡û
>W1810673996
QJVE01000002
Actinomycetota
Arthrobacter stackebrandtii CCM 2783 [QJVE]
10675
10600
-
Arg
TCT
[ENA]
¡û
>W1511343671
JREV01000024
Actinobacteria
Arthrobacter sp. A3 [JREV] A3 [JREV]
68808
68733
-
Arg
TCT
[ENA]
¡û
>C161052866
CP013200
Actinomycetota
Arthrobacter alpinus ERGS4:06 [CP013200]
2242626
2242551
-
Arg
TCT
[Ensembl]
¡û
>C161060670
CP013745
Actinomycetota
Arthrobacter alpinus A3 [CP013745]
2081486
2081561
+
Arg
TCT
[Ensembl]
¡û
>W1710537491
FNTV01000001
Actinomycetota
Arthrobacter alpinus [FNTV]
671144
671069
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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