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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Actinobacteria
Anticodon = TGA
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.30817 (5 seq.)
>W1711603582
MOME01000004
Actinomycetota
Protofrankia sp. BMG5.30 BMG5.30 [MOME]
276579
276491
-
Ser
TGA
[ENA]
¡û
>W10114048
ADGT01000031
Actinobacteria
Frankia symbiont of Datisca glomerata [ADGT] of Datisca glomerata [ADGT]
38978
38890
-
Ser
TGA
[ENA]
¡û
>C11109358
CP002801
Actinomycetota
Candidatus Protofrankia datiscae Dg1 [CP002801]
746748
746836
+
Ser
TGA
[Ensembl]
¡û
>W11117384
ADGT01000031
Actinobacteria
Frankia symbiont of Datisca glomerata [ADGT] of Datisca glomerata [ADGT]
38978
38890
-
Ser
TGA
[ENA]
¡û
>W1511479829
JWIO01000024
Actinomycetota
Protofrankia coriariae BMG5.1 [JWIO]
8794
8882
+
Ser
TGA
[ENA]
¡û
Identical group No.34543 (9 seq.)
>PL171000859
CP012477
Actinobacteria
Arthrobacter sp. ERGS1:01 plasmid:unnamed2
555181
555093
-
Ser
TGA
[ENA]
¡û
>W1810167493
PJIN01000005
Actinomycetota
Arthrobacter sp. N199823 [PJIN]
50068
50156
+
Ser
TGA
[ENA]
¡û
>W1810167528
PJIO01000002
Actinomycetota
Arthrobacter sp. GMC3 [PJIO]
516429
516341
-
Ser
TGA
[ENA]
¡û
>W1810242475
PPXB01000001
Actinomycetota
Arthrobacter glacialis TMN-18 [PPXB]
426607
426519
-
Ser
TGA
[ENA]
¡û
>W1810242526
PPXC01000001
Actinomycetota
Arthrobacter glacialis HLT2-12-2 [PPXC]
478968
478880
-
Ser
TGA
[ENA]
¡û
>W1511343682
JREV01000043
Actinobacteria
Arthrobacter sp. A3 [JREV] A3 [JREV]
12364
12452
+
Ser
TGA
[ENA]
¡û
>C161052824
CP013200
Actinomycetota
Arthrobacter alpinus ERGS4:06 [CP013200]
77326
77414
+
Ser
TGA
[Ensembl]
¡û
>C161060679
CP013745
Actinomycetota
Arthrobacter alpinus A3 [CP013745]
4212626
4212538
-
Ser
TGA
[Ensembl]
¡û
>W1710537466
FNTV01000001
Actinomycetota
Arthrobacter alpinus [FNTV]
2829944
2830032
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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