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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Actinobacteria
Anticodon = TTT
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.458722 (5 seq.)
>W1711603619
MOME01000052
Actinomycetota
Protofrankia sp. BMG5.30 BMG5.30 [MOME]
8659
8732
+
Lys
TTT
[ENA]
¡û
>W10114073
ADGT01000136
Actinobacteria
Frankia symbiont of Datisca glomerata [ADGT] of Datisca glomerata [ADGT]
9362
9289
-
Lys
TTT
[ENA]
¡û
>C11109355
CP002801
Actinomycetota
Candidatus Protofrankia datiscae Dg1 [CP002801]
385044
385117
+
Lys
TTT
[Ensembl]
¡û
>W11117409
ADGT01000136
Actinobacteria
Frankia symbiont of Datisca glomerata [ADGT] of Datisca glomerata [ADGT]
9362
9289
-
Lys
TTT
[ENA]
¡û
>W1511479845
JWIO01000067
Actinomycetota
Protofrankia coriariae BMG5.1 [JWIO]
20069
20142
+
Lys
TTT
[ENA]
¡û
Identical group No.507354 (14 seq.)
>W1810167483
PJIN01000003
Actinomycetota
Arthrobacter sp. N199823 [PJIN]
121210
121284
+
Lys
TTT
[ENA]
¡û
>W1810167523
PJIO01000002
Actinomycetota
Arthrobacter sp. GMC3 [PJIO]
180288
180362
+
Lys
TTT
[ENA]
¡û
>W1810242497
PPXB01000005
Actinomycetota
Arthrobacter glacialis TMN-18 [PPXB]
109631
109557
-
Lys
TTT
[ENA]
¡û
>W1810242547
PPXC01000005
Actinomycetota
Arthrobacter glacialis HLT2-12-2 [PPXC]
234997
235071
+
Lys
TTT
[ENA]
¡û
>W1810627311
QHLZ01000004
Actinomycetota
Arthrobacter psychrochitiniphilus GP3 [QHLZ]
215683
215757
+
Lys
TTT
[ENA]
¡û
>W1810673880
QJVC01000001
Actinomycetota
Arthrobacter psychrolactophilus B7 [QJVC]
163033
163107
+
Lys
TTT
[ENA]
¡û
>W1810673982
QJVD01000030
Actinomycetota
Arthrobacter livingstonensis LI2 [QJVD]
22620
22695
+
Lys
TTT
[ENA]
¡û
>W1810673997
QJVE01000003
Actinomycetota
Arthrobacter stackebrandtii CCM 2783 [QJVE]
423067
422993
-
Lys
TTT
[ENA]
¡û
>C151029502
CP007595
Actinomycetota
Arthrobacter sp. PAMC 25486 [CP007595]
2615205
2615130
-
Lys
TTT
[Ensembl]
¡û
>C151097186
CP012677
Actinomycetota
Arthrobacter alpinus R3.8 [CP012677]
3625743
3625818
+
Lys
TTT
-
¡û
>W1511343701
JREV01000067
Actinobacteria
Arthrobacter sp. A3 [JREV] A3 [JREV]
64020
64095
+
Lys
TTT
[ENA]
¡û
>C161052831
CP013200
Actinomycetota
Arthrobacter alpinus ERGS4:06 [CP013200]
775996
776071
+
Lys
TTT
[Ensembl]
¡û
>C161060685
CP013745
Actinomycetota
Arthrobacter alpinus A3 [CP013745]
3410924
3410849
-
Lys
TTT
[Ensembl]
¡û
>W1710537472
FNTV01000001
Actinomycetota
Arthrobacter alpinus [FNTV]
3609749
3609824
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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