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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Actinomycetota
Anticodon = ACG
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.383920 (6 seq.)
>W1711277026
LZIP01000046
Actinomycetota
Mycolicibacterium fortuitum [LZIP]
1236
1312
+
Arg
ACG
[ENA]
¡û
>W1711961960
NCSV01000076
Actinomycetota
Mycolicibacterium peregrinum [NCSV]
6211
6287
+
Arg
ACG
[ENA]
¡û
>PL201000048
AP022566
Actinomycetota
Mycolicibacterium alvei JCM 12272 plasmid:pJCM12272 [AP022566]
17175
17099
-
Arg
ACG
[ENA]
¡û
>W1610070084
BCSZ01000022
Actinomycetota
Mycolicibacterium fortuitum subsp. acetamidolyticum [BCSZ]
3494
3570
+
Arg
ACG
[ENA]
¡û
>W1611036311
LZIP01000046
Actinomycetota
Mycolicibacterium fortuitum [LZIP]
1236
1312
+
Arg
ACG
[ENA]
¡û
>W1710067457
BCSZ01000022
Actinomycetota
Mycolicibacterium fortuitum subsp. acetamidolyticum [BCSZ]
3494
3570
+
Arg
ACG
[ENA]
¡û
Identical group No.725747 (1 seq.)
>PL201000007
AP020327
Actinomycetota
Mycobacterium avium subsp. hominissuis JP-H-1 plasmid:p1-JPH1 [AP020327]
108491
108418
-
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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