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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Actinomycetota
Anticodon = CTT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.740614 (53 seq.)
>PL203000009
AP022566
Actinomycetota
Mycolicibacterium alvei JCM 12272 plasmid:pJCM12272 [AP022566]
19449
19375
-
Lys
CTT
[ENA]
¡û
>C153000774
CP009914
Actinomycetota
Mycobacterium sp. VKM Ac-1817D [CP009914]
527178
527252
+
Lys
CTT
[Ensembl]
¡û
>W2030013052
JAAZWL010000005
Actinomycetota
Mycolicibacterium fortuitum isolate_4 [JAAZWL]
170589
170515
-
Lys
CTT
[ENA]
¡û
>W2030013053
JAAZWM010000006
Actinomycetota
Mycolicibacterium fortuitum isolate_2 [JAAZWM]
33655
33581
-
Lys
CTT
[ENA]
¡û
>W2030044992
UGQY01000004
Actinomycetota
Mycolicibacterium fortuitum NCTC1542 [UGQY]
1329965
1330039
+
Lys
CTT
[ENA]
¡û
>W2030049793
VHPZ01000058
Actinomycetota
Mycolicibacterium fortuitum MTB7 [VHPZ]
23831
23905
+
Lys
CTT
[ENA]
¡û
>C233000304
AP025518
Actinomycetota
Mycolicibacterium fortuitum subsp. fortuitum JCM6387 [AP025518]
528277
528351
+
Lys
CTT
-
¡û
>C233004118
CP089608
Actinomycetota
Mycolicibacterium fortuitum Kelantanesensis [CP089608]
3570521
3570595
+
Lys
CTT
-
¡û
>C233008493
CP107719
Actinomycetota
Mycolicibacterium fortuitum MF GZ001 [CP107719]
518733
518807
+
Lys
CTT
-
¡û
>C233008625
CP110127
Actinomycetota
Mycolicibacterium fortuitum ATCC 35855 [CP110127]
526654
526728
+
Lys
CTT
-
¡û
>W2130016305
JACSHC010000014
Actinomycetota
Mycolicibacterium fortuitum W5 [JACSHC]
40331
40405
+
Lys
CTT
[ENA]
¡û
>W2130016309
JACSHD010000025
Actinomycetota
Mycolicibacterium fortuitum T60a [JACSHD]
55801
55875
+
Lys
CTT
[ENA]
¡û
>W2130030046
JAFFSW010000014
Actinomycetota
Mycolicibacterium sp. GESEQ-9 [JAFFSW]
85977
86051
+
Lys
CTT
[ENA]
¡û
>C163000358
CP011269
Actinomycetota
Mycolicibacterium fortuitum CT6 [CP011269]
456370
456444
+
Lys
CTT
[Ensembl]
¡û
>C163001010
CP014258
Actinomycetota
Mycolicibacterium fortuitum subsp. fortuitum DSM 46621 = ATCC 6841 [CP014258]
456485
456559
+
Lys
CTT
-
¡û
>W1630003308
BCSZ01000002
Actinomycetota
Mycolicibacterium fortuitum subsp. acetamidolyticum [BCSZ]
208335
208409
+
Lys
CTT
[ENA]
¡û
>W1630003311
BCSZ01000022
Actinomycetota
Mycolicibacterium fortuitum subsp. acetamidolyticum [BCSZ]
1225
1299
+
Lys
CTT
[ENA]
¡û
>W1630020509
LZIH01000075
Actinomycetota
Mycolicibacterium fortuitum [LZIH]
129509
129583
+
Lys
CTT
[ENA]
¡û
>W1630020512
LZIP01000045
Actinomycetota
Mycolicibacterium fortuitum [LZIP]
131059
131133
+
Lys
CTT
[ENA]
¡û
>W1630020518
LZIP01000156
Actinomycetota
Mycolicibacterium fortuitum [LZIP]
40477
40551
+
Lys
CTT
[ENA]
¡û
>W1630020519
LZIV01000137
Actinomycetota
Mycolicibacterium fortuitum [LZIV]
38315
38241
-
Lys
CTT
[ENA]
¡û
>W1630020521
LZIW01000173
Actinomycetota
Mycolicibacterium fortuitum [LZIW]
49064
48990
-
Lys
CTT
[ENA]
¡û
>W1630020531
LZKM01000057
Actinomycetota
Mycolicibacterium fortuitum [LZKM]
41381
41307
-
Lys
CTT
[ENA]
¡û
>W1630020532
LZKN01000143
Actinomycetota
Mycolicibacterium fortuitum [LZKN]
56080
56154
+
Lys
CTT
[ENA]
¡û
>W1630020534
LZKO01000098
Actinomycetota
Mycolicibacterium fortuitum [LZKO]
29538
29612
+
Lys
CTT
[ENA]
¡û
>W1630020545
LZLP01000026
Actinomycetota
Mycolicibacterium fortuitum [LZLP]
145792
145866
+
Lys
CTT
[ENA]
¡û
>W1630020546
LZLZ01000217
Actinomycetota
Mycolicibacterium fortuitum [LZLZ]
30012
30086
+
Lys
CTT
[ENA]
¡û
>W1630020586
LZSI01000174
Actinomycetota
Mycolicibacterium fortuitum [LZSI]
136149
136223
+
Lys
CTT
[ENA]
¡û
>W1630020587
LZSJ01000012
Actinomycetota
Mycolicibacterium fortuitum [LZSJ]
45747
45673
-
Lys
CTT
[ENA]
¡û
>W1630020589
LZSN01000089
Actinomycetota
Mycolicibacterium fortuitum [LZSN]
37556
37482
-
Lys
CTT
[ENA]
¡û
>W1630020593
LZSR01000148
Actinomycetota
Mycolicibacterium fortuitum [LZSR]
37556
37482
-
Lys
CTT
[ENA]
¡û
>W1630020594
LZSS01000192
Actinomycetota
Mycolicibacterium fortuitum [LZSS]
37561
37487
-
Lys
CTT
[ENA]
¡û
>W1730002546
BCSZ01000002
Actinomycetota
Mycolicibacterium fortuitum subsp. acetamidolyticum [BCSZ]
208335
208409
+
Lys
CTT
[ENA]
¡û
>W1730002549
BCSZ01000022
Actinomycetota
Mycolicibacterium fortuitum subsp. acetamidolyticum [BCSZ]
1225
1299
+
Lys
CTT
[ENA]
¡û
>W1730024311
LZIH01000075
Actinomycetota
Mycolicibacterium fortuitum [LZIH]
129509
129583
+
Lys
CTT
[ENA]
¡û
>W1730024314
LZIP01000045
Actinomycetota
Mycolicibacterium fortuitum [LZIP]
131059
131133
+
Lys
CTT
[ENA]
¡û
>W1730024320
LZIP01000156
Actinomycetota
Mycolicibacterium fortuitum [LZIP]
40477
40551
+
Lys
CTT
[ENA]
¡û
>W1730024321
LZIV01000137
Actinomycetota
Mycolicibacterium fortuitum [LZIV]
38315
38241
-
Lys
CTT
[ENA]
¡û
>W1730024323
LZIW01000173
Actinomycetota
Mycolicibacterium fortuitum [LZIW]
49064
48990
-
Lys
CTT
[ENA]
¡û
>W1730024333
LZKM01000057
Actinomycetota
Mycolicibacterium fortuitum [LZKM]
41381
41307
-
Lys
CTT
[ENA]
¡û
>W1730024334
LZKN01000143
Actinomycetota
Mycolicibacterium fortuitum [LZKN]
56080
56154
+
Lys
CTT
[ENA]
¡û
>W1730024336
LZKO01000098
Actinomycetota
Mycolicibacterium fortuitum [LZKO]
29538
29612
+
Lys
CTT
[ENA]
¡û
>W1730024347
LZLP01000026
Actinomycetota
Mycolicibacterium fortuitum [LZLP]
145792
145866
+
Lys
CTT
[ENA]
¡û
>W1730024348
LZLZ01000217
Actinomycetota
Mycolicibacterium fortuitum [LZLZ]
30012
30086
+
Lys
CTT
[ENA]
¡û
>W1730024430
LZSI01000174
Actinomycetota
Mycolicibacterium fortuitum [LZSI]
136149
136223
+
Lys
CTT
[ENA]
¡û
>W1730024431
LZSJ01000012
Actinomycetota
Mycolicibacterium fortuitum [LZSJ]
45747
45673
-
Lys
CTT
[ENA]
¡û
>W1730024433
LZSN01000089
Actinomycetota
Mycolicibacterium fortuitum [LZSN]
37556
37482
-
Lys
CTT
[ENA]
¡û
>W1730024437
LZSR01000148
Actinomycetota
Mycolicibacterium fortuitum [LZSR]
37556
37482
-
Lys
CTT
[ENA]
¡û
>W1730024438
LZSS01000192
Actinomycetota
Mycolicibacterium fortuitum [LZSS]
37561
37487
-
Lys
CTT
[ENA]
¡û
>W1730025742
MBEK01000111
Actinomycetota
Mycolicibacterium fortuitum [MBEK]
23671
23745
+
Lys
CTT
[ENA]
¡û
>W1730025744
MBER01000050
Actinomycetota
Mycolicibacterium fortuitum [MBER]
179580
179654
+
Lys
CTT
[ENA]
¡û
>W1730038706
NCSV01000076
Actinomycetota
Mycolicibacterium peregrinum [NCSV]
3943
4017
+
Lys
CTT
[ENA]
¡û
>W133002015
AOHR01000204
Actinomycetota
Mycobacterium sp. VKM Ac-1817D [AOHR]
33224
33298
+
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK