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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Actinomycetota
Anticodon = GTA
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.116325 (8 seq.)
>W1810154999
PIZU01000064
Actinomycetota
Mycobacterium sp. QGD 101 [PIZU]
3439
3526
+
Tyr
GTA
[ENA]
¡û
>PL201000038
AP022566
Actinomycetota
Mycolicibacterium alvei JCM 12272 plasmid:pJCM12272 [AP022566]
18180
18093
-
Tyr
GTA
[ENA]
¡û
>W1620001140
LGTW01000011
Actinomycetota
Mycolicibacterium wolinskyi [LGTW]
175238
175325
+
Tyr
GTA
[ENA]
¡û
>W1620001795
LZIP01000046
Actinomycetota
Mycolicibacterium fortuitum [LZIP]
231
318
+
Tyr
GTA
[ENA]
¡û
>W1720001272
JMHR01000147
Actinomycetota
Mycobacterium sp. SWH-M3 [JMHR]
19723
19810
+
Tyr
GTA
[ENA]
¡û
>W1720001561
LGTW01000011
Actinomycetota
Mycolicibacterium wolinskyi [LGTW]
175238
175325
+
Tyr
GTA
[ENA]
¡û
>W1720002605
LZIP01000046
Actinomycetota
Mycolicibacterium fortuitum [LZIP]
231
318
+
Tyr
GTA
[ENA]
¡û
>W1720003735
NCSV01000076
Actinomycetota
Mycolicibacterium peregrinum [NCSV]
5207
5294
+
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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