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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Actinomycetota
Anticodon = GTC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.532131 (12 seq.)
>W1711277023
LZIP01000046
Actinomycetota
Mycolicibacterium fortuitum [LZIP]
811
886
+
Asp
GTC
[ENA]
¡û
>W1711961956
NCSV01000076
Actinomycetota
Mycolicibacterium peregrinum [NCSV]
5787
5862
+
Asp
GTC
[ENA]
¡û
>PL171001878
LT703506
Actinobacteria
Mycobacterium chimaera Mycobacterium chimaera MC045 plasmid:2
239169
239094
-
Asp
GTC
[ENA]
¡û
>W141090025
AUWS01000014
Actinomycetota
Mycobacterium sp. UM_WWY [AUWS]
94011
94086
+
Asp
GTC
[ENA]
¡û
>W1911241755
NSFD01000059
Actinomycetota
Mycobacterium avium FLAC0165 [NSFD]
16246
16321
+
Asp
GTC
[ENA]
¡û
>PL201000044
AP022566
Actinomycetota
Mycolicibacterium alvei JCM 12272 plasmid:pJCM12272 [AP022566]
17599
17524
-
Asp
GTC
[ENA]
¡û
>W2011067063
NSFD01000059
Actinomycetota
Mycobacterium avium FLAC0165 [NSFD]
16246
16321
+
Asp
GTC
[ENA]
¡û
>W2110590917
JAHBOL010000021
Actinomycetota
Mycolicibacterium goodii 16IE56 [JAHBOL]
123198
123123
-
Asp
GTC
[ENA]
¡û
>W1610070080
BCSZ01000022
Actinomycetota
Mycolicibacterium fortuitum subsp. acetamidolyticum [BCSZ]
3070
3145
+
Asp
GTC
[ENA]
¡û
>W1611036308
LZIP01000046
Actinomycetota
Mycolicibacterium fortuitum [LZIP]
811
886
+
Asp
GTC
[ENA]
¡û
>W1710067453
BCSZ01000022
Actinomycetota
Mycolicibacterium fortuitum subsp. acetamidolyticum [BCSZ]
3070
3145
+
Asp
GTC
[ENA]
¡û
>W1710084927
BDMY01000032
Actinomycetota
Mycobacterium avium subsp. hominissuis [BDMY]
49351
49276
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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