This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Alphaproteobacteria
Anticodon = CAA
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.166199 (1 seq.)
>PL171001244
CP016463
Alphaproteobacteria
Bosea sp. RAC05 plasmid:pBSY19_1
471234
471319
+
Leu
CAA
[ENA]
¡û
Identical group No.219704 (23 seq.)
>W1710853421
LLWQ01000202
Alphaproteobacteria
Paracoccus sp. MKU1 [LLWQ]
57299
57382
+
Leu
CAA
[ENA]
¡û
>W1710889730
LNBC01000006
Alphaproteobacteria
Paracoccus aminovorans [LNBC]
4494
4411
-
Leu
CAA
[ENA]
¡û
>W131158904
AQUO01000001
Alphaproteobacteria
Paracoccus sp. N5 [AQUO]
2870437
2870520
+
Leu
CAA
[ENA]
¡û
>C016039
CP000489
Alphaproteobacteria
Paracoccus denitrificans PD1222 [CP000489, CP000490]
1343603
1343520
-
Leu
CAA
[Ensembl]
¡û
>W141216611
AZVA01000001
Alphaproteobacteria
Paracoccus sp. J55 [AZVA]
291392
291309
-
Leu
CAA
[ENA]
¡û
>W141277347
JAEN01000004
Alphaproteobacteria
Paracoccus sp. J39 [JAEN]
121687
121770
+
Leu
CAA
[ENA]
¡û
>WENV170564856
CZPY01000006
[CZPY] metagenome; PAHs-polluted Soil
4494
4411
-
Leu
CAA
[ENA]
¢þ
>PL191000068
CP000489
Alphaproteobacteria
Paracoccus denitrificans PD1222 plasmid:phage/plasmid primase, P4 family (CP000489)
1343603
1343520
-
Leu
CAA
[Ensembl]
¡û
>C181117206
CP025430
Alphaproteobacteria
Paracoccus zhejiangensis J6 [CP025430]
946145
946062
-
Leu
CAA
-
¡û
>C181203398
LN832559
Alphaproteobacteria
Paracoccus aminovorans [LN832559]
1906680
1906763
+
Leu
CAA
-
¡û
>C191134363
CP035090
Alphaproteobacteria
Paracoccus denitrificans ATCC 19367 [CP035090, CP035091]
237861
237944
+
Leu
CAA
-
¡û
>W09103059
AAIT01000007
Alphaproteobacteria
Paracoccus denitrificans PD1222 [AAIT]
197016
197099
+
Leu
CAA
[ENA]
¡û
>W1810235987
PPGA01000005
Alphaproteobacteria
Paracoccus denitrificans ISTOD1 [PPGA]
219668
219751
+
Leu
CAA
[ENA]
¡û
>W1810759491
QPJL01000020
Alphaproteobacteria
Paracoccus lutimaris CECT 8525 [QPJL]
40068
40151
+
Leu
CAA
[ENA]
¡û
>W11143033
AEPN01000002
Alphaproteobacteria
Paracoccus sp. TRP [AEPN]
1792
1709
-
Leu
CAA
[ENA]
¡û
>W1610049834
BBFH01000281
Alphaproteobacteria
Paracoccus denitrificans JCM 21484 [BBFH]
1885
1968
+
Leu
CAA
[ENA]
¡û
>W1610716545
LLWQ01000202
Alphaproteobacteria
Paracoccus sp. MKU1 [LLWQ]
57299
57382
+
Leu
CAA
[ENA]
¡û
>W1610750108
LNBC01000006
Alphaproteobacteria
Paracoccus aminovorans [LNBC]
4494
4411
-
Leu
CAA
[ENA]
¡û
>W1710046233
BBFH01000281
Alphaproteobacteria
Paracoccus denitrificans JCM 21484 [BBFH]
1885
1968
+
Leu
CAA
[ENA]
¡û
>W1710518444
FNEA01000003
Alphaproteobacteria
Paracoccus denitrificans [FNEA]
200652
200735
+
Leu
CAA
[ENA]
¡û
>W1710563614
FOPU01000071
Alphaproteobacteria
Paracoccus aminovorans [FOPU]
469
552
+
Leu
CAA
[ENA]
¡û
>W1710574665
FOYK01000003
Alphaproteobacteria
Paracoccus denitrificans [FOYK]
198731
198814
+
Leu
CAA
[ENA]
¡û
>W1710608104
FXAQ01000001
Alphaproteobacteria
Paracoccus sp. J56 [FXAQ]
1859
1776
-
Leu
CAA
[ENA]
¡û
Identical group No.219722 (5 seq.)
>W1712104774
NIPZ01000124
Alphaproteobacteria
Paracoccus yeei [NIPZ]
11416
11499
+
Leu
CAA
[ENA]
¡û
>PL171001448
CP020443
Alphaproteobacteria
Paracoccus yeei FDAARGOS_252 plasmid:unnamed3
42380
42463
+
Leu
CAA
[ENA]
¡û
>PL191000442
CP024427
Alphaproteobacteria
Paracoccus yeei TT13 plasmid:pTT13-5 (CP024427)
55210
55293
+
Leu
CAA
[ENA]
¡û
>PL191000828
CP031079
Alphaproteobacteria
Paracoccus yeei CCUG 32053 plasmid:pYEE1 (CP031079)
416579
416496
-
Leu
CAA
[ENA]
¡û
>W141558876
JHWH01000020
Alphaproteobacteria
Paracoccus yeei ATCC BAA-599 [JHWH]
60912
60829
-
Leu
CAA
[ENA]
¡û
Identical group No.223200 (3 seq.)
>W131216060
ATVN01000003
Alphaproteobacteria
Pseudorhodobacter ferrugineus DSM 5888 [ATVN]
247929
248012
+
Leu
CAA
[ENA]
¡û
>PL191001407
CP039965
Alphaproteobacteria
Pseudorhodobacter sp. S12M18 plasmid:unnamed1 (CP039965)
535222
535139
-
Leu
CAA
[ENA]
¡û
>W1511698500
LGHV01000037
Alphaproteobacteria
Pseudorhodobacter ferrugineus LMG 22047 [LGHV]
281439
281522
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK