This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Alphaproteobacteria
Anticodon = GTA
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.154213 (14 seq.)
>PL171000054
AP010951
Alphaproteobacteria
Azospirillum sp. B510 plasmid:pAB510e
357234
357319
+
Tyr
GTA
[ENA]
¡û
>PL171001738
FQ311873
Alphaproteobacteria
Azospirillum lipoferum 4B plasmid:AZO_p5
168914
168999
+
Tyr
GTA
[ENA]
¡û
>C181063142
CP022364
Alphaproteobacteria
Azospirillum sp. TSH58 [CP022364]
2479850
2479935
+
Tyr
GTA
-
¡û
>C191088089
CP032345
Alphaproteobacteria
Azospirillum brasilense MTCC4039 [CP032345]
786751
786666
-
Tyr
GTA
-
¡û
>W1910612874
LGQS01000028
Alphaproteobacteria
Azospirillum sp. TSA6c [LGQS]
6046161
6046076
-
Tyr
GTA
[ENA]
¡û
>W1910612890
LGQS01000028
Alphaproteobacteria
Azospirillum sp. TSA6c [LGQS]
3394637
3394552
-
Tyr
GTA
[ENA]
¡û
>W1910613025
LGQV01000003
Alphaproteobacteria
Azospirillum sp. TSH58 [LGQV]
434
349
-
Tyr
GTA
[ENA]
¡û
>W1910613116
LGQW01000015
Alphaproteobacteria
Azospirillum sp. TSH64 [LGQW]
5808398
5808483
+
Tyr
GTA
[ENA]
¡û
>W1911138122
NOWT01000034
Alphaproteobacteria
Azospirillum brasilense 2A1 [NOWT]
18976
18891
-
Tyr
GTA
[ENA]
¡û
>W1911138134
NOWT01000070
Alphaproteobacteria
Azospirillum brasilense 2A1 [NOWT]
9277
9362
+
Tyr
GTA
[ENA]
¡û
>C10101248
AP010946
Alphaproteobacteria
Azospirillum sp. B510 [AP010946]
647024
647109
+
Tyr
GTA
[Ensembl]
¡û
>C121016574
FQ311868
Alphaproteobacteria
Azospirillum lipoferum 4B [FQ311868]
416404
416489
+
Tyr
GTA
[Ensembl]
¡û
>C161085675
CP015285
Alphaproteobacteria
Azospirillum humicireducens SgZ-5 [CP015285]
394156
394241
+
Tyr
GTA
[Ensembl]
¡û
>C161085693
CP015285
Alphaproteobacteria
Azospirillum humicireducens SgZ-5 [CP015285]
2856525
2856610
+
Tyr
GTA
[Ensembl]
¡û
Identical group No.185895 (10 seq.)
>W1710785246
LJHR01000033
Alphaproteobacteria
alpha proteobacterium AAP38 [LJHR]
374
290
-
Tyr
GTA
[ENA]
¡û
>W131223675
AUCG01000003
Alphaproteobacteria
Niveispirillum irakense DSM 11586 [AUCG]
109481
109565
+
Tyr
GTA
[ENA]
¡û
>PL191000780
CP029834
Alphaproteobacteria
Azospirillum sp. M2T2B2 plasmid:unnamed4 (CP029834)
197808
197724
-
Tyr
GTA
[ENA]
¡û
>C181120681
CP025611
Alphaproteobacteria
Niveispirillum cyanobacteriorum TH16 [CP025611, CP025612]
3235512
3235596
+
Tyr
GTA
-
¡û
>C181185922
CP029829
Alphaproteobacteria
Azospirillum ramasamyi M2T2B2 [CP029829]
335408
335492
+
Tyr
GTA
-
¡û
>W1910548168
FZOI01000003
Alphaproteobacteria
Azospirillum sp. RU38E [FZOI]
274182
274098
-
Tyr
GTA
[ENA]
¡û
>W1910548550
FZOP01000003
Alphaproteobacteria
Azospirillum sp. RU37A [FZOP]
274182
274098
-
Tyr
GTA
[ENA]
¡û
>W1911139297
NOXU01000012
Alphaproteobacteria
Niveispirillum lacus 1·î14Æü [NOXU]
354
270
-
Tyr
GTA
[ENA]
¡û
>W1810605710
QGNJ01000013
Alphaproteobacteria
Oleisolibacter albus NAU-10 [QGNJ]
420
336
-
Tyr
GTA
[ENA]
¡û
>W1610649052
LJHR01000033
Alphaproteobacteria
alpha proteobacterium AAP38 [LJHR]
374
290
-
Tyr
GTA
[ENA]
¡û
Identical group No.224962 (2 seq.)
>PL191001405
CP039965
Alphaproteobacteria
Pseudorhodobacter sp. S12M18 plasmid:unnamed1 (CP039965)
664947
664864
-
Tyr
GTA
[ENA]
¡û
>W1511698357
LGHS01000010
Alphaproteobacteria
Pseudorhodobacter aquimaris KCTC 23043 [LGHS]
16026
16109
+
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK