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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Alphaproteobacteria
Anticodon = TAA
HIT:
8 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.157614 (49 seq.)
>W1710917429
LNWA01000004
Alphaproteobacteria
Tritonibacter mobilis [LNWA]
52646
52561
-
Leu
TAA
[ENA]
¡û
>W1710917602
LNWD01000026
Alphaproteobacteria
Tritonibacter mobilis [LNWD]
29630
29715
+
Leu
TAA
[ENA]
¡û
>W1710917698
LNWF01000023
Alphaproteobacteria
Tritonibacter mobilis [LNWF]
52690
52605
-
Leu
TAA
[ENA]
¡û
>W1710917741
LNWG01000029
Alphaproteobacteria
Tritonibacter mobilis [LNWG]
52646
52561
-
Leu
TAA
[ENA]
¡û
>W1710917781
LNWH01000019
Alphaproteobacteria
Tritonibacter mobilis [LNWH]
29630
29715
+
Leu
TAA
[ENA]
¡û
>W1710917836
LNWI01000029
Alphaproteobacteria
Tritonibacter mobilis [LNWI]
52646
52561
-
Leu
TAA
[ENA]
¡û
>W1710917844
LNWJ01000001
Alphaproteobacteria
Tritonibacter mobilis [LNWJ]
29630
29715
+
Leu
TAA
[ENA]
¡û
>W1710917924
LNWK01000029
Alphaproteobacteria
Tritonibacter mobilis [LNWK]
29630
29715
+
Leu
TAA
[ENA]
¡û
>W1710917973
LNWL01000034
Alphaproteobacteria
Tritonibacter mobilis [LNWL]
29654
29739
+
Leu
TAA
[ENA]
¡û
>W1710918018
LNWM01000022
Alphaproteobacteria
Tritonibacter mobilis [LNWM]
29654
29739
+
Leu
TAA
[ENA]
¡û
>W1710918070
LNWN01000033
Alphaproteobacteria
Tritonibacter mobilis [LNWN]
52646
52561
-
Leu
TAA
[ENA]
¡û
>W1710918112
LNWO01000018
Alphaproteobacteria
Tritonibacter mobilis [LNWO]
52646
52561
-
Leu
TAA
[ENA]
¡û
>W1710918165
LNWP01000036
Alphaproteobacteria
Tritonibacter mobilis [LNWP]
29654
29739
+
Leu
TAA
[ENA]
¡û
>W1710918211
LNWQ01000032
Alphaproteobacteria
Tritonibacter mobilis [LNWQ]
29631
29716
+
Leu
TAA
[ENA]
¡û
>W1710918834
LNXD01000024
Alphaproteobacteria
Tritonibacter mobilis [LNXD]
52728
52643
-
Leu
TAA
[ENA]
¡û
>W1710918929
LNXF01000017
Alphaproteobacteria
Tritonibacter mobilis [LNXF]
52646
52561
-
Leu
TAA
[ENA]
¡û
>W1710919060
LNXI01000004
Alphaproteobacteria
Tritonibacter mobilis [LNXI]
52646
52561
-
Leu
TAA
[ENA]
¡û
>W1710919126
LNXJ01000025
Alphaproteobacteria
Tritonibacter mobilis [LNXJ]
29630
29715
+
Leu
TAA
[ENA]
¡û
>W1710919179
LNXK01000036
Alphaproteobacteria
Tritonibacter mobilis [LNXK]
29630
29715
+
Leu
TAA
[ENA]
¡û
>W1710919223
LNXL01000020
Alphaproteobacteria
Tritonibacter mobilis [LNXL]
29654
29739
+
Leu
TAA
[ENA]
¡û
>W1710919274
LNXM01000029
Alphaproteobacteria
Tritonibacter mobilis [LNXM]
52646
52561
-
Leu
TAA
[ENA]
¡û
>W1710919282
LNXN01000002
Alphaproteobacteria
Tritonibacter mobilis [LNXN]
29631
29716
+
Leu
TAA
[ENA]
¡û
>W1710919366
LNXO01000030
Alphaproteobacteria
Tritonibacter mobilis [LNXO]
29723
29808
+
Leu
TAA
[ENA]
¡û
>PL171001014
CP015231
Alphaproteobacteria
Ruegeria mobilis F1926 plasmid:unnamed1
149838
149923
+
Leu
TAA
[ENA]
¡û
>W131137643
AQCH01000032
Alphaproteobacteria
Tritonibacter mobilis F1926 [AQCH]
575
490
-
Leu
TAA
[ENA]
¡û
>W1511518756
JXYG01000025
Alphaproteobacteria
Tritonibacter mobilis S1942 [JXYG]
52647
52562
-
Leu
TAA
[ENA]
¡û
>W1610775327
LNWA01000004
Alphaproteobacteria
Tritonibacter mobilis [LNWA]
52646
52561
-
Leu
TAA
[ENA]
¡û
>W1610775500
LNWD01000026
Alphaproteobacteria
Tritonibacter mobilis [LNWD]
29630
29715
+
Leu
TAA
[ENA]
¡û
>W1610775596
LNWF01000023
Alphaproteobacteria
Tritonibacter mobilis [LNWF]
52690
52605
-
Leu
TAA
[ENA]
¡û
>W1610775639
LNWG01000029
Alphaproteobacteria
Tritonibacter mobilis [LNWG]
52646
52561
-
Leu
TAA
[ENA]
¡û
>W1610775679
LNWH01000019
Alphaproteobacteria
Tritonibacter mobilis [LNWH]
29630
29715
+
Leu
TAA
[ENA]
¡û
>W1610775734
LNWI01000029
Alphaproteobacteria
Tritonibacter mobilis [LNWI]
52646
52561
-
Leu
TAA
[ENA]
¡û
>W1610775742
LNWJ01000001
Alphaproteobacteria
Tritonibacter mobilis [LNWJ]
29630
29715
+
Leu
TAA
[ENA]
¡û
>W1610775822
LNWK01000029
Alphaproteobacteria
Tritonibacter mobilis [LNWK]
29630
29715
+
Leu
TAA
[ENA]
¡û
>W1610775871
LNWL01000034
Alphaproteobacteria
Tritonibacter mobilis [LNWL]
29654
29739
+
Leu
TAA
[ENA]
¡û
>W1610775916
LNWM01000022
Alphaproteobacteria
Tritonibacter mobilis [LNWM]
29654
29739
+
Leu
TAA
[ENA]
¡û
>W1610775968
LNWN01000033
Alphaproteobacteria
Tritonibacter mobilis [LNWN]
52646
52561
-
Leu
TAA
[ENA]
¡û
>W1610776010
LNWO01000018
Alphaproteobacteria
Tritonibacter mobilis [LNWO]
52646
52561
-
Leu
TAA
[ENA]
¡û
>W1610776063
LNWP01000036
Alphaproteobacteria
Tritonibacter mobilis [LNWP]
29654
29739
+
Leu
TAA
[ENA]
¡û
>W1610776109
LNWQ01000032
Alphaproteobacteria
Tritonibacter mobilis [LNWQ]
29631
29716
+
Leu
TAA
[ENA]
¡û
>W1610776732
LNXD01000024
Alphaproteobacteria
Tritonibacter mobilis [LNXD]
52728
52643
-
Leu
TAA
[ENA]
¡û
>W1610776827
LNXF01000017
Alphaproteobacteria
Tritonibacter mobilis [LNXF]
52646
52561
-
Leu
TAA
[ENA]
¡û
>W1610776958
LNXI01000004
Alphaproteobacteria
Tritonibacter mobilis [LNXI]
52646
52561
-
Leu
TAA
[ENA]
¡û
>W1610777024
LNXJ01000025
Alphaproteobacteria
Tritonibacter mobilis [LNXJ]
29630
29715
+
Leu
TAA
[ENA]
¡û
>W1610777077
LNXK01000036
Alphaproteobacteria
Tritonibacter mobilis [LNXK]
29630
29715
+
Leu
TAA
[ENA]
¡û
>W1610777121
LNXL01000020
Alphaproteobacteria
Tritonibacter mobilis [LNXL]
29654
29739
+
Leu
TAA
[ENA]
¡û
>W1610777172
LNXM01000029
Alphaproteobacteria
Tritonibacter mobilis [LNXM]
52646
52561
-
Leu
TAA
[ENA]
¡û
>W1610777180
LNXN01000002
Alphaproteobacteria
Tritonibacter mobilis [LNXN]
29631
29716
+
Leu
TAA
[ENA]
¡û
>W1610777264
LNXO01000030
Alphaproteobacteria
Tritonibacter mobilis [LNXO]
29723
29808
+
Leu
TAA
[ENA]
¡û
Identical group No.157667 (27 seq.)
>W1710853415
LLWQ01000175
Alphaproteobacteria
Paracoccus sp. MKU1 [LLWQ]
21804
21719
-
Leu
TAA
[ENA]
¡û
>W131158885
AQUO01000001
Alphaproteobacteria
Paracoccus sp. N5 [AQUO]
483512
483597
+
Leu
TAA
[ENA]
¡û
>C016021
CP000489
Alphaproteobacteria
Paracoccus denitrificans PD1222 [CP000489, CP000490]
2057161
2057246
+
Leu
TAA
[Ensembl]
¡û
>WENV180285362
OBID01356342
[OBID] metagenome; sludge
170
255
+
Leu
TAA
[ENA]
¢þ
>W141216635
AZVA01000011
Alphaproteobacteria
Paracoccus sp. J55 [AZVA]
40362
40277
-
Leu
TAA
[ENA]
¡û
>W141277324
JAEM01000052
Alphaproteobacteria
Paracoccus pantotrophus J46 [JAEM]
14039
13954
-
Leu
TAA
[ENA]
¡û
>W141277366
JAEN01000014
Alphaproteobacteria
Paracoccus sp. J39 [JAEN]
54654
54739
+
Leu
TAA
[ENA]
¡û
>W141279598
JAGK01000051
Alphaproteobacteria
Paracoccus pantotrophus J40 [JAGK]
10899
10984
+
Leu
TAA
[ENA]
¡û
>PL191000050
CP000489
Alphaproteobacteria
Paracoccus denitrificans PD1222 plasmid:phage/plasmid primase, P4 family (CP000489)
2057161
2057246
+
Leu
TAA
[Ensembl]
¡û
>C191134371
CP035090
Alphaproteobacteria
Paracoccus denitrificans ATCC 19367 [CP035090, CP035091]
798451
798536
+
Leu
TAA
-
¡û
>W09103069
AAIT01000012
Alphaproteobacteria
Paracoccus denitrificans PD1222 [AAIT]
92718
92633
-
Leu
TAA
[ENA]
¡û
>W1810235996
PPGA01000013
Alphaproteobacteria
Paracoccus denitrificans ISTOD1 [PPGA]
57865
57950
+
Leu
TAA
[ENA]
¡û
>W1810750747
QOZU01000075
Alphaproteobacteria
Paracoccus pantotrophus KS1 [QOZU]
12721
12636
-
Leu
TAA
[ENA]
¡û
>W1810759484
QPJL01000013
Alphaproteobacteria
Paracoccus lutimaris CECT 8525 [QPJL]
36504
36419
-
Leu
TAA
[ENA]
¡û
>W1810762315
QPML01000033
Alphaproteobacteria
Paracoccus versutus MAL 1HM19 [QPML]
28795
28710
-
Leu
TAA
[ENA]
¡û
>W1810862257
QTUJ01000002
Alphaproteobacteria
Paracoccus versutus DSM 17099 [QTUJ]
735576
735491
-
Leu
TAA
[ENA]
¡û
>W1810884870
QUMX01000038
Alphaproteobacteria
Paracoccus versutus DSM 582 [QUMX]
11618
11703
+
Leu
TAA
[ENA]
¡û
>C11117057
CP002897
Alphaproteobacteria
Paracoccus denitrificans [CP002897]
1594255
1594170
-
Leu
TAA
[Ensembl]
¡û
>W1511348629
JRKO01000096
Alphaproteobacteria
Paracoccus versutus DSM 582 [JRKO]
55
140
+
Leu
TAA
[ENA]
¡û
>W121059999
AJFB01000172
Alphaproteobacteria
Paracoccus denitrificans SD1 [AJFB]
83
168
+
Leu
TAA
[ENA]
¡û
>W1610049818
BBFH01000018
Alphaproteobacteria
Paracoccus denitrificans JCM 21484 [BBFH]
4291
4376
+
Leu
TAA
[ENA]
¡û
>W1610716539
LLWQ01000175
Alphaproteobacteria
Paracoccus sp. MKU1 [LLWQ]
21804
21719
-
Leu
TAA
[ENA]
¡û
>W1710046217
BBFH01000018
Alphaproteobacteria
Paracoccus denitrificans JCM 21484 [BBFH]
4291
4376
+
Leu
TAA
[ENA]
¡û
>W1710518476
FNEA01000024
Alphaproteobacteria
Paracoccus denitrificans [FNEA]
9635
9550
-
Leu
TAA
[ENA]
¡û
>W1710571582
FOWA01000045
Alphaproteobacteria
Paracoccus pantotrophus [FOWA]
13969
13884
-
Leu
TAA
[ENA]
¡û
>W1710574697
FOYK01000024
Alphaproteobacteria
Paracoccus denitrificans [FOYK]
9668
9583
-
Leu
TAA
[ENA]
¡û
>W1710581782
FPKI01000042
Alphaproteobacteria
Paracoccus pantotrophus [FPKI]
31728
31643
-
Leu
TAA
[ENA]
¡û
Identical group No.158479 (8 seq.)
>W1712104570
NIPU01000047
Alphaproteobacteria
Haematobacter massiliensis [NIPU]
7714
7629
-
Leu
TAA
[ENA]
¡û
>W1712104600
NIPV01000096
Alphaproteobacteria
Haematobacter missouriensis [NIPV]
54073
53988
-
Leu
TAA
[ENA]
¡û
>W1712104654
NIPW01000068
Alphaproteobacteria
Haematobacter genomosp. 1 [NIPW]
17105
17190
+
Leu
TAA
[ENA]
¡û
>W1712104681
NIPX01000023
Alphaproteobacteria
Haematobacter missouriensis [NIPX]
166432
166517
+
Leu
TAA
[ENA]
¡û
>W1712104714
NIPY01000020
Alphaproteobacteria
Haematobacter massiliensis [NIPY]
13524
13609
+
Leu
TAA
[ENA]
¡û
>W141461729
JFGS01000047
Alphaproteobacteria
Haematobacter missouriensis [JFGS]
17261
17346
+
Leu
TAA
[ENA]
¡û
>PL191001306
CP035513
Alphaproteobacteria
Haematobacter massiliensis OT1 plasmid:pOT1-3 (CP035513)
267827
267742
-
Leu
TAA
[ENA]
¡û
>W141523480
JGYG01000007
Alphaproteobacteria
Haematobacter massiliensis [JGYG]
253866
253781
-
Leu
TAA
[ENA]
¡û
Identical group No.162823 (2 seq.)
>PL171001007
CP014801
Alphaproteobacteria
Thiobacimonas profunda JLT2016 plasmid:pTPRO5
81565
81480
-
Leu
TAA
[ENA]
¡û
>W1710015463
AQQR01000020
Alphaproteobacteria
Marinibacterium profundimaris [AQQR]
70174
70089
-
Leu
TAA
[ENA]
¡û
Identical group No.166200 (1 seq.)
>PL171001246
CP016463
Alphaproteobacteria
Bosea sp. RAC05 plasmid:pBSY19_1
471519
471604
+
Leu
TAA
[ENA]
¡û
Identical group No.167548 (2 seq.)
>WENV181227941
OFDN01083855
[OFDN] hot springs metagenome; Water
201
286
+
Leu
TAA
[ENA]
¢þ
>PL191000472
CP025613
Alphaproteobacteria
Niveispirillum cyanobacteriorum TH16 plasmid:unnamed1 (CP025613)
528809
528894
+
Leu
TAA
[ENA]
¡û
Identical group No.169254 (1 seq.)
>PL171000999
CP014688
Alphaproteobacteria
Acetobacter persici TMW2.1084 plasmid:pAC1084_1
283375
283290
-
Leu
TAA
[ENA]
¡û
Identical group No.174110 (1 seq.)
>PL191001404
CP039965
Alphaproteobacteria
Pseudorhodobacter sp. S12M18 plasmid:unnamed1 (CP039965)
824262
824179
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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