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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Alphaproteobacteria
Anticodon = TCT
HIT:
7 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.309443 (13 seq.)
>W1910007999
BDES01000102
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3188 [BDES]
2366
2290
-
Arg
TCT
[ENA]
¡û
>W1910008100
BDEU01000102
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3277 [BDEU]
3536
3460
-
Arg
TCT
[ENA]
¡û
>W1910008156
BDEV01000113
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3278 [BDEV]
3536
3460
-
Arg
TCT
[ENA]
¡û
>W1910008262
BDEX01000101
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3280 [BDEX]
3536
3460
-
Arg
TCT
[ENA]
¡û
>W1810069703
PEBQ01000103
Alphaproteobacteria
Acetobacter pomorum LHT 2458 [PEBQ]
851
775
-
Arg
TCT
[ENA]
¡û
>PL201000391
CP039845
Alphaproteobacteria
Acetobacter pasteurianus CICC 22518 plasmid:pAP22518-1 [CP039845]
77868
77944
+
Arg
TCT
[ENA]
¡û
>W2010077300
BDES01000102
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3188 [BDES]
2366
2290
-
Arg
TCT
[ENA]
¡û
>W2010077401
BDEU01000102
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3277 [BDEU]
3536
3460
-
Arg
TCT
[ENA]
¡û
>W2010077457
BDEV01000113
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3278 [BDEV]
3536
3460
-
Arg
TCT
[ENA]
¡û
>W2010077563
BDEX01000101
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3280 [BDEX]
3536
3460
-
Arg
TCT
[ENA]
¡û
>W2010732642
JACIKN010000018
Alphaproteobacteria
Acetobacter pomorum DSM 11825 [JACIKN]
4249
4173
-
Arg
TCT
[ENA]
¡û
>W2310007892
BAPM01000146
Alphaproteobacteria
Acetobacter pomorum DSM 11825 [BAPM]
1030
954
-
Arg
TCT
[ENA]
¡û
>W2310020637
BSCN01000082
Alphaproteobacteria
Acetobacter pasteurianus WSS15 [BSCN]
26629
26705
+
Arg
TCT
[ENA]
¡û
Identical group No.310137 (44 seq.)
>W1710853434
LLWQ01000221
Alphaproteobacteria
Paracoccus sp. MKU1 [LLWQ]
117340
117416
+
Arg
TCT
[ENA]
¡û
>C016035
CP000489
Alphaproteobacteria
Paracoccus denitrificans PD1222 [CP000489, CP000490]
1789050
1788974
-
Arg
TCT
[Ensembl]
¡û
>W141142901
AWRV01000183
Alphaproteobacteria
Rhodobacteraceae bacterium PD-2 [AWRV]
1480
1404
-
Arg
TCT
[ENA]
¡û
>W141277318
JAEM01000034
Alphaproteobacteria
Paracoccus pantotrophus J46 [JAEM]
7277
7201
-
Arg
TCT
[ENA]
¡û
>W141279578
JAGK01000016
Alphaproteobacteria
Paracoccus pantotrophus J40 [JAGK]
60232
60308
+
Arg
TCT
[ENA]
¡û
>PL191000064
CP000489
Alphaproteobacteria
Paracoccus denitrificans PD1222 plasmid:phage/plasmid primase, P4 family (CP000489)
1789050
1788974
-
Arg
TCT
[Ensembl]
¡û
>C191134401
CP035090
Alphaproteobacteria
Paracoccus denitrificans ATCC 19367 [CP035090, CP035091]
530340
530264
-
Arg
TCT
-
¡û
>W09103045
AAIT01000003
Alphaproteobacteria
Paracoccus denitrificans PD1222 [AAIT]
165492
165416
-
Arg
TCT
[ENA]
¡û
>W1911495013
OBMN01000001
Alphaproteobacteria
Rhodobacter vinaykumarii JA123 [OBMN]
76231
76155
-
Arg
TCT
[ENA]
¡û
>W1810235977
PPGA01000004
Alphaproteobacteria
Paracoccus denitrificans ISTOD1 [PPGA]
118838
118914
+
Arg
TCT
[ENA]
¡û
>W1810585338
QFCQ01000151
Alphaproteobacteria
Paracoccus thiocyanatus SST [QFCQ]
1595
1671
+
Arg
TCT
[ENA]
¡û
>W1810670805
QJSD01000010
Alphaproteobacteria
Primorskyibacter marinus PX7 [QJSD]
110674
110750
+
Arg
TCT
[ENA]
¡û
>W1810750737
QOZU01000029
Alphaproteobacteria
Paracoccus pantotrophus KS1 [QOZU]
27840
27916
+
Arg
TCT
[ENA]
¡û
>W1810762331
QPML01000062
Alphaproteobacteria
Paracoccus versutus MAL 1HM19 [QPML]
31348
31424
+
Arg
TCT
[ENA]
¡û
>W1810862265
QTUJ01000003
Alphaproteobacteria
Paracoccus versutus DSM 17099 [QTUJ]
467642
467718
+
Arg
TCT
[ENA]
¡û
>W1810884868
QUMX01000029
Alphaproteobacteria
Paracoccus versutus DSM 582 [QUMX]
10042
9966
-
Arg
TCT
[ENA]
¡û
>W2010099700
BJUR01000005
Alphaproteobacteria
Paracoccus denitrificans NBRC 102528 [BJUR]
136565
136641
+
Arg
TCT
[ENA]
¡û
>W2010712145
JACHOD010000006
Alphaproteobacteria
Paracoccus denitrificans DSM 104981 [JACHOD]
60712
60636
-
Arg
TCT
[ENA]
¡û
>W2011155917
OBMN01000001
Alphaproteobacteria
Rhodobacter vinaykumarii JA123 [OBMN]
76231
76155
-
Arg
TCT
[ENA]
¡û
>W2011375659
RBLI01000001
Alphaproteobacteria
Paracoccus pantotrophus DSM 2944 [RBLI]
1325105
1325181
+
Arg
TCT
[ENA]
¡û
>W2011429002
RIAQ01000028
Alphaproteobacteria
Paracoccus pantotrophus NJUST38 [RIAQ]
28294
28218
-
Arg
TCT
[ENA]
¡û
>W2011622416
SLWW01000015
Alphaproteobacteria
Rhodovulum euryhalinum DSM 4868 [SLWW]
5022
5098
+
Arg
TCT
[ENA]
¡û
>W2011677901
SRJI02000002
Alphaproteobacteria
Carideicomes alvinocaridis SCR17 [SRJI]
155156
155080
-
Arg
TCT
[ENA]
¡û
>W2011971107
VCBQ01000014
Alphaproteobacteria
Paracoccus sp. FO-3 [VCBQ]
6711
6635
-
Arg
TCT
[ENA]
¡û
>W2110547712
JAGHQZ010000018
Alphaproteobacteria
Paracoccus sp. R12_1 [JAGHQZ]
11506
11430
-
Arg
TCT
[ENA]
¡û
>W2110547757
JAGHRA010000016
Alphaproteobacteria
Paracoccus sp. R12_2 [JAGHRA]
11506
11430
-
Arg
TCT
[ENA]
¡û
>W2110578827
JAGXCX010000001
Alphaproteobacteria
Paracoccus sp. pheM1 [JAGXCX]
884156
884232
+
Arg
TCT
[ENA]
¡û
>C211069273
CP047166
Alphaproteobacteria
Rhodobacteraceae bacterium C31 [CP047166]
934532
934456
-
Arg
TCT
-
¡û
>C231043947
CP035284
Alphaproteobacteria
Paracoccus versutus UW1 [CP035284]
2569126
2569050
-
Arg
TCT
-
¡û
>C241046080
CP038197
Alphaproteobacteria
Paracoccus versutus DSM 17099 [CP038197]
298896
298972
+
Arg
TCT
-
¡û
>C241046134
CP038203
Alphaproteobacteria
Paracoccus pantotrophus DSM 11072 [CP038203]
1740619
1740543
-
Arg
TCT
-
¡û
>C241089161
CP044426
Alphaproteobacteria
Paracoccus pantotrophus DSM 2944 [CP044423, CP044426]
989736
989660
-
Arg
TCT
-
¡û
>C241174512
CP058690
Alphaproteobacteria
Paracoccus pantotrophus ACCC10489 [CP058689, CP058690]
888523
888599
+
Arg
TCT
-
¡û
>C241358921
CP141052
Alphaproteobacteria
Paracoccus denitrificans HAMBI_2443 [CP141052]
316391
316467
+
Arg
TCT
-
¡û
>W1511348618
JRKO01000037
Alphaproteobacteria
Paracoccus versutus DSM 582 [JRKO]
6771
6695
-
Arg
TCT
[ENA]
¡û
>W1610049829
BBFH01000194
Alphaproteobacteria
Paracoccus denitrificans JCM 21484 [BBFH]
1499
1575
+
Arg
TCT
[ENA]
¡û
>W1610716558
LLWQ01000221
Alphaproteobacteria
Paracoccus sp. MKU1 [LLWQ]
117340
117416
+
Arg
TCT
[ENA]
¡û
>W1710046228
BBFH01000194
Alphaproteobacteria
Paracoccus denitrificans JCM 21484 [BBFH]
1499
1575
+
Arg
TCT
[ENA]
¡û
>W1710518448
FNEA01000004
Alphaproteobacteria
Paracoccus denitrificans [FNEA]
185418
185494
+
Arg
TCT
[ENA]
¡û
>W1710571570
FOWA01000025
Alphaproteobacteria
Paracoccus pantotrophus [FOWA]
42530
42606
+
Arg
TCT
[ENA]
¡û
>W1710574674
FOYK01000004
Alphaproteobacteria
Paracoccus denitrificans [FOYK]
60712
60636
-
Arg
TCT
[ENA]
¡û
>W1710581779
FPKI01000029
Alphaproteobacteria
Paracoccus pantotrophus [FPKI]
57050
57126
+
Arg
TCT
[ENA]
¡û
>W1710596174
FTMK01000002
Alphaproteobacteria
Paracoccus thiocyanatus [FTMK]
154568
154644
+
Arg
TCT
[ENA]
¡û
>W1710599124
FTOM01000001
Alphaproteobacteria
Phaeovulum vinaykumarii [FTOM]
76229
76153
-
Arg
TCT
[ENA]
¡û
Identical group No.339516 (18 seq.)
>W1710852993
LLWF02000018
Alphaproteobacteria
Roseomonas mucosa [LLWF]
39966
40042
+
Arg
TCT
[ENA]
¡û
>C171039544
CP015583
Alphaproteobacteria
Roseomonas gilardii U14-5 [CP015583, CP015584]
1861476
1861552
+
Arg
TCT
-
¡û
>W141276642
JADY01000008
Alphaproteobacteria
Roseomonas gilardii subsp. rosea ATCC BAA-691 [JADY]
158570
158646
+
Arg
TCT
[ENA]
¡û
>C181102057
CP024588
Alphaproteobacteria
Roseomonas sp. FDAARGOS_362 [CP024588]
913655
913579
-
Arg
TCT
-
¡û
>W141558707
JHWD01000003
Alphaproteobacteria
Roseomonas mucosa ATCC BAA-692 [JHWD]
185710
185786
+
Arg
TCT
[ENA]
¡û
>PL201000235
CP015583
Alphaproteobacteria
Roseomonas gilardii U14-5 plasmid: [CP015583]
1861476
1861552
+
Arg
TCT
[ENA]
¡û
>W2011647022
SNVJ01000008
Alphaproteobacteria
Roseomonas sp. M0104 [SNVJ]
16823
16899
+
Arg
TCT
[ENA]
¡û
>W2011839009
UGVN01000001
Alphaproteobacteria
Roseomonas mucosa NCTC13291 [UGVN]
3583404
3583328
-
Arg
TCT
[ENA]
¡û
>W2011839074
UGVO01000001
Alphaproteobacteria
Roseomonas gilardii subsp. rosea NCTC13290 [UGVO]
1958109
1958033
-
Arg
TCT
[ENA]
¡û
>W2012004731
VEIX01000003
Alphaproteobacteria
Roseomonas gilardii DE0006 [VEIX]
293597
293521
-
Arg
TCT
[ENA]
¡û
>C231032827
CP025061
Alphaproteobacteria
Roseomonas mucosa PG [CP025061]
2603247
2603323
+
Arg
TCT
-
¡û
>C231245145
CP087719
Alphaproteobacteria
Roseomonas sp. OT10 [CP087719]
1941299
1941223
-
Arg
TCT
-
¡û
>W2110762751
RCVQ01000001
Alphaproteobacteria
Roseomonas sp. KE0001 [RCVQ]
717903
717827
-
Arg
TCT
[ENA]
¡û
>C231412920
CP099471
Alphaproteobacteria
Roseomonas mucosa TT14 [CP099471]
4071011
4071087
+
Arg
TCT
-
¡û
>C241086935
CP044117
Alphaproteobacteria
Roseomonas mucosa FDAARGOS_658 [CP044114, CP044115, CP044116, CP044117]
1627599
1627523
-
Arg
TCT
-
¡û
>W121113828
ALOX01000010
Alphaproteobacteria
Roseomonas sp. B5 [ALOX]
70096
70020
-
Arg
TCT
[ENA]
¡û
>W1610716123
LLWF01000026
Alphaproteobacteria
Roseomonas mucosa [LLWF]
21612
21536
-
Arg
TCT
[ENA]
¡û
>W1710084285
BDLP01000189
Alphaproteobacteria
Roseomonas sp. TAS13 [BDLP]
6931
7007
+
Arg
TCT
[ENA]
¡û
Identical group No.445748 (3 seq.)
>PL191001398
CP039965
Alphaproteobacteria
Pseudorhodobacter sp. S12M18 plasmid:unnamed1 (CP039965)
1382699
1382775
+
Arg
TCT
[ENA]
¡û
>W2010725671
JACIEI010000012
Alphaproteobacteria
Sulfitobacter undariae DSM 102234 [JACIEI]
95017
95093
+
Arg
TCT
[ENA]
¡û
>W1511640261
LDPY01000001
Alphaproteobacteria
Puniceibacterium sp. IMCC21224 [LDPY]
2150289
2150213
-
Arg
TCT
[ENA]
¡û
Identical group No.449310 (1 seq.)
>PL171001000
CP014688
Alphaproteobacteria
Acetobacter persici TMW2.1084 plasmid:pAC1084_1
267104
267028
-
Arg
TCT
[ENA]
¡û
Identical group No.449312 (1 seq.)
>PL171001252
CP016463
Alphaproteobacteria
Bosea sp. RAC05 plasmid:pBSY19_1
473925
474001
+
Arg
TCT
[ENA]
¡û
Identical group No.879606 (1 seq.)
>PL171000079
AP017608
Alphaproteobacteria
Mesorhizobium loti TONO plasmid:plasmid_3
52394
52467
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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