This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Alphaproteobacteria
Anticodon = TCT
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.301656 (26 seq.)
>W1710853434
LLWQ01000221
Alphaproteobacteria
Paracoccus sp. MKU1 [LLWQ]
117340
117416
+
Arg
TCT
[ENA]
¡û
>C016035
CP000489
Alphaproteobacteria
Paracoccus denitrificans PD1222 [CP000489, CP000490]
1789050
1788974
-
Arg
TCT
[Ensembl]
¡û
>W141142901
AWRV01000183
Alphaproteobacteria
Rhodobacteraceae bacterium PD-2 [AWRV]
1480
1404
-
Arg
TCT
[ENA]
¡û
>W141277318
JAEM01000034
Alphaproteobacteria
Paracoccus pantotrophus J46 [JAEM]
7277
7201
-
Arg
TCT
[ENA]
¡û
>W141279578
JAGK01000016
Alphaproteobacteria
Paracoccus pantotrophus J40 [JAGK]
60232
60308
+
Arg
TCT
[ENA]
¡û
>PL191000064
CP000489
Alphaproteobacteria
Paracoccus denitrificans PD1222 plasmid:phage/plasmid primase, P4 family (CP000489)
1789050
1788974
-
Arg
TCT
[Ensembl]
¡û
>C191134401
CP035090
Alphaproteobacteria
Paracoccus denitrificans ATCC 19367 [CP035090, CP035091]
530340
530264
-
Arg
TCT
-
¡û
>W09103045
AAIT01000003
Alphaproteobacteria
Paracoccus denitrificans PD1222 [AAIT]
165492
165416
-
Arg
TCT
[ENA]
¡û
>W1911495013
OBMN01000001
Alphaproteobacteria
Phaeovulum vinaykumarii JA123 [OBMN]
76231
76155
-
Arg
TCT
[ENA]
¡û
>W1810235977
PPGA01000004
Alphaproteobacteria
Paracoccus denitrificans ISTOD1 [PPGA]
118838
118914
+
Arg
TCT
[ENA]
¡û
>W1810585338
QFCQ01000151
Alphaproteobacteria
Paracoccus thiocyanatus SST [QFCQ]
1595
1671
+
Arg
TCT
[ENA]
¡û
>W1810670805
QJSD01000010
Alphaproteobacteria
Primorskyibacter marinus PX7 [QJSD]
110674
110750
+
Arg
TCT
[ENA]
¡û
>W1810750737
QOZU01000029
Alphaproteobacteria
Paracoccus pantotrophus KS1 [QOZU]
27840
27916
+
Arg
TCT
[ENA]
¡û
>W1810762331
QPML01000062
Alphaproteobacteria
Paracoccus versutus MAL 1HM19 [QPML]
31348
31424
+
Arg
TCT
[ENA]
¡û
>W1810862265
QTUJ01000003
Alphaproteobacteria
Paracoccus versutus DSM 17099 [QTUJ]
467642
467718
+
Arg
TCT
[ENA]
¡û
>W1810884868
QUMX01000029
Alphaproteobacteria
Paracoccus versutus DSM 582 [QUMX]
10042
9966
-
Arg
TCT
[ENA]
¡û
>W1511348618
JRKO01000037
Alphaproteobacteria
Paracoccus versutus DSM 582 [JRKO]
6771
6695
-
Arg
TCT
[ENA]
¡û
>W1610049829
BBFH01000194
Alphaproteobacteria
Paracoccus denitrificans JCM 21484 [BBFH]
1499
1575
+
Arg
TCT
[ENA]
¡û
>W1610716558
LLWQ01000221
Alphaproteobacteria
Paracoccus sp. MKU1 [LLWQ]
117340
117416
+
Arg
TCT
[ENA]
¡û
>W1710046228
BBFH01000194
Alphaproteobacteria
Paracoccus denitrificans JCM 21484 [BBFH]
1499
1575
+
Arg
TCT
[ENA]
¡û
>W1710518448
FNEA01000004
Alphaproteobacteria
Paracoccus denitrificans [FNEA]
185418
185494
+
Arg
TCT
[ENA]
¡û
>W1710571570
FOWA01000025
Alphaproteobacteria
Paracoccus pantotrophus [FOWA]
42530
42606
+
Arg
TCT
[ENA]
¡û
>W1710574674
FOYK01000004
Alphaproteobacteria
Paracoccus denitrificans [FOYK]
60712
60636
-
Arg
TCT
[ENA]
¡û
>W1710581779
FPKI01000029
Alphaproteobacteria
Paracoccus pantotrophus [FPKI]
57050
57126
+
Arg
TCT
[ENA]
¡û
>W1710596174
FTMK01000002
Alphaproteobacteria
Paracoccus thiocyanatus [FTMK]
154568
154644
+
Arg
TCT
[ENA]
¡û
>W1710599124
FTOM01000001
Alphaproteobacteria
Phaeovulum vinaykumarii [FTOM]
76229
76153
-
Arg
TCT
[ENA]
¡û
Identical group No.361569 (1 seq.)
>PL171001252
CP016463
Alphaproteobacteria
Bosea sp. RAC05 plasmid:pBSY19_1
473925
474001
+
Arg
TCT
[ENA]
¡û
Identical group No.381796 (1 seq.)
>PL171001000
CP014688
Alphaproteobacteria
Acetobacter persici TMW2.1084 plasmid:pAC1084_1
267104
267028
-
Arg
TCT
[ENA]
¡û
Identical group No.414264 (2 seq.)
>PL191001398
CP039965
Alphaproteobacteria
Pseudorhodobacter sp. S12M18 plasmid:unnamed1 (CP039965)
1382699
1382775
+
Arg
TCT
[ENA]
¡û
>W1511640261
LDPY01000001
Alphaproteobacteria
Puniceibacterium sp. IMCC21224 [LDPY]
2150289
2150213
-
Arg
TCT
[ENA]
¡û
Identical group No.806350 (1 seq.)
>PL171000079
AP017608
Alphaproteobacteria
Mesorhizobium loti TONO plasmid:plasmid_3
52394
52467
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK