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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Alphaproteobacteria
Anticodon = TGG
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.301657 (8 seq.)
>C016010
CP000489
Alphaproteobacteria
Paracoccus denitrificans PD1222 [CP000489, CP000490]
848876
848952
+
Pro
TGG
[Ensembl]
¡û
>PL191000039
CP000489
Alphaproteobacteria
Paracoccus denitrificans PD1222 plasmid:phage/plasmid primase, P4 family (CP000489)
848876
848952
+
Pro
TGG
[Ensembl]
¡û
>C191134381
CP035090
Alphaproteobacteria
Paracoccus denitrificans ATCC 19367 [CP035090, CP035091]
2443275
2443351
+
Pro
TGG
-
¡û
>W09103030
AAIT01000001
Alphaproteobacteria
Paracoccus denitrificans PD1222 [AAIT]
105706
105782
+
Pro
TGG
[ENA]
¡û
>W1610049832
BBFH01000218
Alphaproteobacteria
Paracoccus denitrificans JCM 21484 [BBFH]
72
148
+
Pro
TGG
[ENA]
¡û
>W1710046231
BBFH01000218
Alphaproteobacteria
Paracoccus denitrificans JCM 21484 [BBFH]
72
148
+
Pro
TGG
[ENA]
¡û
>W1710518469
FNEA01000014
Alphaproteobacteria
Paracoccus denitrificans [FNEA]
105528
105604
+
Pro
TGG
[ENA]
¡û
>W1710574690
FOYK01000014
Alphaproteobacteria
Paracoccus denitrificans [FOYK]
105502
105578
+
Pro
TGG
[ENA]
¡û
Identical group No.381791 (1 seq.)
>PL171000494
CP003238
Alphaproteobacteria
Tistrella mobilis KA081020-065 plasmid:pTM2
651949
652023
+
Pro
TGG
[ENA]
¡û
Identical group No.381793 (1 seq.)
>PL171000994
CP014688
Alphaproteobacteria
Acetobacter persici TMW2.1084 plasmid:pAC1084_1
76189
76265
+
Pro
TGG
[ENA]
¡û
Identical group No.407575 (1 seq.)
>PL171001300
CP017242
Alphaproteobacteria
Rhizobium etli 8C-3 plasmid:pRsp8C3a
241860
241784
-
Pro
TGG
[ENA]
¡û
Identical group No.536301 (1 seq.)
>PL191000829
CP031081
Alphaproteobacteria
Paracoccus yeei CCUG 32053 plasmid:pYEE3 (CP031081)
83995
83920
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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