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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Alphaproteobacteria
Anticodon = TGG
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.334219 (11 seq.)
>C016010
CP000489
Alphaproteobacteria
Paracoccus denitrificans PD1222 [CP000489, CP000490]
848876
848952
+
Pro
TGG
[Ensembl]
¡û
>PL191000039
CP000489
Alphaproteobacteria
Paracoccus denitrificans PD1222 plasmid:phage/plasmid primase, P4 family (CP000489)
848876
848952
+
Pro
TGG
[Ensembl]
¡û
>C191134381
CP035090
Alphaproteobacteria
Paracoccus denitrificans ATCC 19367 [CP035090, CP035091]
2443275
2443351
+
Pro
TGG
-
¡û
>W09103030
AAIT01000001
Alphaproteobacteria
Paracoccus denitrificans PD1222 [AAIT]
105706
105782
+
Pro
TGG
[ENA]
¡û
>W2010099710
BJUR01000011
Alphaproteobacteria
Paracoccus denitrificans NBRC 102528 [BJUR]
105152
105228
+
Pro
TGG
[ENA]
¡û
>W2010712129
JACHOD010000001
Alphaproteobacteria
Paracoccus denitrificans DSM 104981 [JACHOD]
47516
47440
-
Pro
TGG
[ENA]
¡û
>C241358942
CP141052
Alphaproteobacteria
Paracoccus denitrificans HAMBI_2443 [CP141052]
1256565
1256489
-
Pro
TGG
-
¡û
>W1610049832
BBFH01000218
Alphaproteobacteria
Paracoccus denitrificans JCM 21484 [BBFH]
72
148
+
Pro
TGG
[ENA]
¡û
>W1710046231
BBFH01000218
Alphaproteobacteria
Paracoccus denitrificans JCM 21484 [BBFH]
72
148
+
Pro
TGG
[ENA]
¡û
>W1710518469
FNEA01000014
Alphaproteobacteria
Paracoccus denitrificans [FNEA]
105528
105604
+
Pro
TGG
[ENA]
¡û
>W1710574690
FOYK01000014
Alphaproteobacteria
Paracoccus denitrificans [FOYK]
105502
105578
+
Pro
TGG
[ENA]
¡û
Identical group No.336050 (1 seq.)
>PL171000494
CP003238
Alphaproteobacteria
Tistrella mobilis KA081020-065 plasmid:pTM2
651949
652023
+
Pro
TGG
[ENA]
¡û
Identical group No.339515 (32 seq.)
>W1710852992
LLWF02000018
Alphaproteobacteria
Roseomonas mucosa [LLWF]
39462
39535
+
Pro
TGG
[ENA]
¡û
>C171039543
CP015583
Alphaproteobacteria
Roseomonas gilardii U14-5 [CP015583, CP015584]
1860972
1861045
+
Pro
TGG
-
¡û
>C171074541
CP018190
Alphaproteobacteria
Granulibacter bethesdensis NIH5.1 [CP018190]
1062557
1062630
+
Pro
TGG
-
¡û
>C171074593
CP018191
Alphaproteobacteria
Granulibacter bethesdensis NIH9.1 [CP018191]
1071424
1071497
+
Pro
TGG
-
¡û
>C171074645
CP018192
Alphaproteobacteria
Granulibacter bethesdensis NIH6.1 [CP018192]
1071173
1071246
+
Pro
TGG
-
¡û
>C171074697
CP018193
Alphaproteobacteria
Granulibacter bethesdensis NIH7.1 [CP018193]
1067582
1067655
+
Pro
TGG
-
¡û
>C171074749
CP018194
Alphaproteobacteria
Granulibacter bethesdensis NIH8.1 [CP018194]
1071425
1071498
+
Pro
TGG
-
¡û
>C171074801
CP018195
Alphaproteobacteria
Granulibacter bethesdensis NIH1.4 [CP018195]
1062617
1062690
+
Pro
TGG
-
¡û
>C009823
CP000394
Alphaproteobacteria
Granulibacter bethesdensis CGDNIH1 [CP000394]
1062611
1062684
+
Pro
TGG
[Ensembl]
¡û
>W141276641
JADY01000008
Alphaproteobacteria
Roseomonas gilardii subsp. rosea ATCC BAA-691 [JADY]
158065
158138
+
Pro
TGG
[ENA]
¡û
>C181102056
CP024588
Alphaproteobacteria
Roseomonas sp. FDAARGOS_362 [CP024588]
914167
914094
-
Pro
TGG
-
¡û
>W141558706
JHWD01000003
Alphaproteobacteria
Roseomonas mucosa ATCC BAA-692 [JHWD]
185206
185279
+
Pro
TGG
[ENA]
¡û
>W1910913970
NHRY01000217
Alphaproteobacteria
Rhodopila globiformis DSM 161 [NHRY]
25317
25393
+
Pro
TGG
[ENA]
¡û
>PL201000234
CP015583
Alphaproteobacteria
Roseomonas gilardii U14-5 plasmid: [CP015583]
1860972
1861045
+
Pro
TGG
[ENA]
¡û
>C151004013
CP003181
Alphaproteobacteria
Granulibacter bethesdensis NIH3.1 [CP003181]
1096006
1096079
+
Pro
TGG
[Ensembl]
¡û
>C151004088
CP003182
Alphaproteobacteria
Granulibacter bethesdensis CGDNIH4 [CP003182]
2377179
2377106
-
Pro
TGG
[Ensembl]
¡û
>C151004140
CP003183
Alphaproteobacteria
Granulibacter bethesdensis NIH2.1 [CP003183]
2353281
2353208
-
Pro
TGG
[Ensembl]
¡û
>W2010781429
LMUJ01000051
Alphaproteobacteria
Acidisphaera sp. S103 [LMUJ]
293119
293195
+
Pro
TGG
[ENA]
¡û
>W2010966991
NHRY01000217
Alphaproteobacteria
Rhodopila globiformis DSM 161 [NHRY]
25317
25393
+
Pro
TGG
[ENA]
¡û
>W2011839008
UGVN01000001
Alphaproteobacteria
Roseomonas mucosa NCTC13291 [UGVN]
3583908
3583835
-
Pro
TGG
[ENA]
¡û
>W2011839073
UGVO01000001
Alphaproteobacteria
Roseomonas gilardii subsp. rosea NCTC13290 [UGVO]
1958614
1958541
-
Pro
TGG
[ENA]
¡û
>W2012004730
VEIX01000003
Alphaproteobacteria
Roseomonas gilardii DE0006 [VEIX]
294101
294028
-
Pro
TGG
[ENA]
¡û
>W2110137916
JAAEDH010000001
Alphaproteobacteria
Roseomonas arctica LMG 28251 [JAAEDH]
389078
389005
-
Pro
TGG
[ENA]
¡û
>W2110315372
JADFCQ010000001
Alphaproteobacteria
Acetobacteraceae bacterium H6797 [JADFCQ]
218703
218630
-
Pro
TGG
[ENA]
¡û
>C231032826
CP025061
Alphaproteobacteria
Roseomonas mucosa PG [CP025061]
2602743
2602816
+
Pro
TGG
-
¡û
>C231361880
CP095554
Alphaproteobacteria
Roseomonas gilardii subsp. gilardii ATCC 49956 [CP095554]
2925910
2925837
-
Pro
TGG
-
¡û
>C231412919
CP099471
Alphaproteobacteria
Roseomonas mucosa TT14 [CP099471]
4070491
4070564
+
Pro
TGG
-
¡û
>C241086934
CP044117
Alphaproteobacteria
Roseomonas mucosa FDAARGOS_658 [CP044114, CP044115, CP044116, CP044117]
1628103
1628030
-
Pro
TGG
-
¡û
>W121113827
ALOX01000010
Alphaproteobacteria
Roseomonas sp. B5 [ALOX]
70600
70527
-
Pro
TGG
[ENA]
¡û
>W1610716122
LLWF01000026
Alphaproteobacteria
Roseomonas mucosa [LLWF]
22116
22043
-
Pro
TGG
[ENA]
¡û
>W1710084284
BDLP01000189
Alphaproteobacteria
Roseomonas sp. TAS13 [BDLP]
6411
6484
+
Pro
TGG
[ENA]
¡û
>W1710567302
FOSQ01000004
Alphaproteobacteria
Falsiroseomonas stagni DSM 19981 [FOSQ]
210786
210861
+
Pro
TGG
[ENA]
¡û
Identical group No.449308 (1 seq.)
>PL171000994
CP014688
Alphaproteobacteria
Acetobacter persici TMW2.1084 plasmid:pAC1084_1
76189
76265
+
Pro
TGG
[ENA]
¡û
Identical group No.449313 (1 seq.)
>PL171001300
CP017242
Alphaproteobacteria
Rhizobium etli 8C-3 plasmid:pRsp8C3a
241860
241784
-
Pro
TGG
[ENA]
¡û
Identical group No.667158 (1 seq.)
>PL191000829
CP031081
Alphaproteobacteria
Paracoccus yeei CCUG 32053 plasmid:pYEE3 (CP031081)
83995
83920
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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