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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Alveolata
Anticodon = GCC
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.658215 (76 seq.)
>WENV180114117
OAPR01167068
[OAPR] marine metagenome; seawater
210
139
-
Gly
GCC
[ENA]
¢þ
>WENV180294737
OBIY01438556
[OBIY] beach sand metagenome; beach sand
140
66
-
Gly
GCC
[ENA]
¢þ
>WENV180309855
OBJS01061443
[OBJS] beach sand metagenome; beach sand
157
83
-
Gly
GCC
[ENA]
¢þ
>WENV180365413
OBOB01129462
[OBOB] marine metagenome; ENVO:00002019, 'BRACKISH WATER
105
177
+
Gly
GCC
[ENA]
¢þ
>WENV180368759
OBOG01000106
[OBOG] marine metagenome; seawater
4012
4084
+
Gly
GCC
[ENA]
¢þ
>WENV180375609
OBOL01031421
[OBOL] marine metagenome; Surface water
533
605
+
Gly
GCC
[ENA]
¢þ
>WENV180376718
OBOM01061117
[OBOM] marine metagenome; Seawater
287
358
+
Gly
GCC
[ENA]
¢þ
>WENV180396427
OBPV01003635
[OBPV] marine metagenome; ENVO:00002010
934
861
-
Gly
GCC
[ENA]
¢þ
>WENV180590002
OCOS01063934
[OCOS] marine metagenome; Sterile flask
323
252
-
Gly
GCC
[ENA]
¢þ
>WENV180590512
OCOT01046545
[OCOT] marine metagenome; ENVO:00002010
155
82
-
Gly
GCC
[ENA]
¢þ
>WENV180593607
OCOX01102223
[OCOX] marine metagenome; ENVO:00002010
97
169
+
Gly
GCC
[ENA]
¢þ
>WENV180593983
OCOY01008158
[OCOY] marine metagenome; ENVO:00002010
606
534
-
Gly
GCC
[ENA]
¢þ
>WENV180650312
OCSY01005776
[OCSY] marine metagenome; 30 L Plastic container
368
296
-
Gly
GCC
[ENA]
¢þ
>WENV181092562
OEBK01008199
[OEBK] marine metagenome; ENVO:00002010 for 'seawater
183
254
+
Gly
GCC
[ENA]
¢þ
>WENV181324241
OFLD01001255
[OFLD] marine metagenome; sea ice
545
618
+
Gly
GCC
[ENA]
¢þ
>WENV181324663
OFLG01001922
[OFLG] seawater metagenome; seawater
610
539
-
Gly
GCC
[ENA]
¢þ
>WENV181385790
OFRK01004161
[OFRK] marine metagenome; sea ice
547
474
-
Gly
GCC
[ENA]
¢þ
>WENV181415357
OGCL01008794
[OGCL] hot springs metagenome; Hot spring water
2414
2487
+
Gly
GCC
[ENA]
¢þ
>WENV181416746
OGCL01137777
[OGCL] hot springs metagenome; Hot spring water
365
291
-
Gly
GCC
[ENA]
¢þ
>WENV183054129
OLGR01018975
[OLGR] seawater metagenome; Sea water
353
424
+
Gly
GCC
[ENA]
¢þ
>WENV183615209
OOEA01110650
[OOEA] marine metagenome; sea ice
56
129
+
Gly
GCC
[ENA]
¢þ
>WENV183616227
OOEC01188643
[OOEC] marine metagenome; sea ice
158
85
-
Gly
GCC
[ENA]
¢þ
>WENV183620873
OOFS01071014
[OOFS] marine metagenome; sea ice
473
402
-
Gly
GCC
[ENA]
¢þ
>WENV183621085
OOFT01005586
[OOFT] marine metagenome; sea ice
694
765
+
Gly
GCC
[ENA]
¢þ
>WENV183622934
OOFW01056155
[OOFW] marine metagenome; sea ice
179
252
+
Gly
GCC
[ENA]
¢þ
>WENV183623522
OOGA01006636
[OOGA] marine metagenome; sea ice
245
316
+
Gly
GCC
[ENA]
¢þ
>WENV183624582
OOGD01050388
[OOGD] marine metagenome; sea ice
360
434
+
Gly
GCC
[ENA]
¢þ
>WENV183624624
OOGD01069672
[OOGD] marine metagenome; sea ice
237
310
+
Gly
GCC
[ENA]
¢þ
>WENV183625566
OOGG01000634
[OOGG] marine metagenome; sea ice
181
108
-
Gly
GCC
[ENA]
¢þ
>WENV183628004
OOGM01001265
[OOGM] marine metagenome; sea ice
1215
1288
+
Gly
GCC
[ENA]
¢þ
>ENV08001716
ABNY01090914
saltern metagenome; microbial fraction from plasmids from marine microbial community in low salinity saltern in San Diego, CA
74
2
-
Gly
GCC
[ENA]
¡û
>ENV08002200
ABON01008835
freshwater metagenome; microbial fraction from tilapia pond at Kent SeaTech (Salton Sea, CA)
17
89
+
Gly
GCC
[ENA]
¡û
>WENV170532241
CEWO01027341
[CEWO] marine metagenome genome assembly TARA_145_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
180
109
-
Gly
GCC
[ENA]
¢þ
>WENV170536370
CEWP01171334
[CEWP] marine metagenome genome assembly TARA_067_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
9317
9246
-
Gly
GCC
[ENA]
¢þ
>WENV170569313
FLMP01166249
[FLMP] seawater metagenome; seawater
327
399
+
Gly
GCC
[ENA]
¢þ
>WENV170605283
FUWD010466102
[FUWD] metagenome; unknown
69
141
+
Gly
GCC
[ENA]
¢þ
>WENV170627039
FUWD013230872
[FUWD] metagenome; unknown
4681
4753
+
Gly
GCC
[ENA]
¢þ
>WENV170630501
FUWD013310666
[FUWD] metagenome; unknown
8592
8664
+
Gly
GCC
[ENA]
¢þ
>WENV170635056
JAHE01209431
[JAHE] sediment metagenome; lake sediment
512
587
+
Gly
GCC
[ENA]
¢þ
>WENV170639216
JFJP01001700
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
17342
17269
-
Gly
GCC
[ENA]
¢þ
>WENV170639238
JFJP01001704
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
8983
9058
+
Gly
GCC
[ENA]
¢þ
>WENV170639272
JFJP01001727
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
3798
3725
-
Gly
GCC
[ENA]
¢þ
>WENV170809357
MDSW01130591
[MDSW] marine metagenome; seawater
1948
1877
-
Gly
GCC
[ENA]
¢þ
>WENV170828839
MDSY01156658
[MDSY] marine metagenome; seawater
5880
5951
+
Gly
GCC
[ENA]
¢þ
>CHL1810000402
AP011960
Stramenopiles
Fistulifera solaris JPCC DA0580 (AP011960)
109777
109703
-
Gly
GCC
[ENA]
¡û
>CHL1810002652
GU591327
Alveolata
Durinskia baltica CS-38 (GU591327)
12108
12037
-
Gly
GCC
[ENA]
¡û
>CHL1810002678
GU591328
Alveolata
Kryptoperidinium foliaceum CCMP1326 (GU591328)
14211
14140
-
Gly
GCC
[ENA]
¡û
>CHL1810005317
JQ088178
Stramenopiles
Ulnaria acus (JQ088178)
11935
11861
-
Gly
GCC
[ENA]
¡û
>CHL1810008266
KC509520
Stramenopiles
Asterionellopsis glacialis ccmp1717 (KC509520)
18979
19052
+
Gly
GCC
[ENA]
¡û
>CHL1810008342
KC509522
Stramenopiles
Cylindrotheca closterium ccmp1855 (KC509522)
54767
54694
-
Gly
GCC
[ENA]
¡û
>CHL1810008374
KC509523
Stramenopiles
Didymosphenia geminata BCC011 (KC509523)
12324
12250
-
Gly
GCC
[ENA]
¡û
>CHL1810008400
KC509524
Stramenopiles
Leptocylindrus danicus ccmp1856 (KC509524)
11371
11298
-
Gly
GCC
[ENA]
¡û
>CHL1810008428
KC509525
Stramenopiles
Lithodesmium undulatum ccmp1797 (KC509525)
12118
12047
-
Gly
GCC
[ENA]
¡û
>CHL1810010645
KF733443
Stramenopiles
Eunotia naegelii utex FD354 (KF733443)
12662
12589
-
Gly
GCC
[ENA]
¡û
>CHL1810013678
KJ958483
Stramenopiles
Roundia cardiophora (KJ958483)
54503
54575
+
Gly
GCC
[ENA]
¡û
>CHL1810013702
KJ958484
Stramenopiles
Cerataulina daemon (KJ958484)
37054
37126
+
Gly
GCC
[ENA]
¡û
>CHL1810013733
KJ958485
Stramenopiles
Thalassiosira weissflogii (KJ958485)
54605
54677
+
Gly
GCC
[ENA]
¡û
>CHL1810034291
KX619437
Stramenopiles
Toxarium undulatum ECT3802 (KX619437)
19494
19421
-
Gly
GCC
[ENA]
¡û
>CHL1810059268
MG755792
Stramenopiles
Plagiogramma staurophorum (MG755792)
2014
1941
-
Gly
GCC
[ENA]
¡û
>CHL1810059293
MG755793
Stramenopiles
Rhizosolenia setigera (MG755793)
18409
18338
-
Gly
GCC
[ENA]
¡û
>CHL1810059298
MG755794
Stramenopiles
Plagiogrammopsis vanheurckii (MG755794)
38253
38324
+
Gly
GCC
[ENA]
¡û
>CHL1810059329
MG755796
Stramenopiles
Guinardia striata (MG755796)
43431
43503
+
Gly
GCC
[ENA]
¡û
>CHL1810059376
MG755798
Stramenopiles
Attheya longicornis (MG755798)
20443
20370
-
Gly
GCC
[ENA]
¡û
>CHL1810059403
MG755799
Stramenopiles
Actinocyclus subtilis (MG755799)
11888
11817
-
Gly
GCC
[ENA]
¡û
>CHL1810059430
MG755800
Stramenopiles
Entomoneis sp. (MG755800)
12080
12006
-
Gly
GCC
[ENA]
¡û
>CHL1810059433
MG755801
Stramenopiles
Triceratium dubium (MG755801)
33635
33708
+
Gly
GCC
[ENA]
¡û
>CHL1810059516
MG755803
Stramenopiles
Psammoneis obaidii (MG755803)
30217
30144
-
Gly
GCC
[ENA]
¡û
>CHL1810059525
MG755804
Stramenopiles
Cyclotella pseudostelligera (MG755804)
54757
54829
+
Gly
GCC
[ENA]
¡û
>CHL1810059571
MG755805
Stramenopiles
Biddulphia biddulphiana (MG755805)
15417
15346
-
Gly
GCC
[ENA]
¡û
>CHL1810059597
MG755806
Stramenopiles
Biddulphia tridens (MG755806)
16205
16132
-
Gly
GCC
[ENA]
¡û
>CHL1810059629
MG755808
Stramenopiles
Acanthoceras zachariasii (MG755808)
34994
35066
+
Gly
GCC
[ENA]
¡û
>CHL090102746
EF067920
stramenopiles
Phaeodactylum tricornutum
12341
12267
-
Gly
GCC
[ENA]
¡û
>CHL090102755
EF067921
stramenopiles
Thalassiosira pseudonana
55236
55308
+
Gly
GCC
[ENA]
¡û
>CHL090103368
Z67753
stramenopiles
Odontella sinensis
86067
85994
-
Gly
GCC
[ENA]
¡û
>W1911638300
PVWJ01000056
Cyanobacteriota
Merismopedia glauca CCAP 1448/3 [PVWJ]
13020
12949
-
Gly
GCC
[ENA]
¡û
>W1610920054
LSSF01000062
Unclassified
Thermoplasmatales archaeon SG8-52-4 [LSSF]
2406
2479
+
Gly
GCC
[ENA]
¡û
Identical group No.669992 (1 seq.)
>CHL1810003211
HM222968
Alveolata
Chromerida sp. RM11 (HM222968)
55722
55651
-
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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