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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Alveolata
Anticodon = GTC
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.253185 (1 seq.)
>CHL090200063
AY217738
Alveolata
Eimeria tenella
6552
6626
+
Asp
GTC
[ENA]
¡û
Identical group No.351206 (5 seq.)
>WENV170817445
MDSX01050524
[MDSX] marine metagenome; seawater
103
30
-
Asp
GTC
[ENA]
¢þ
>CHL1810002632
GU591327
Alveolata
Durinskia baltica CS-38 (GU591327)
17699
17772
+
Asp
GTC
[ENA]
¡û
>CHL1810002659
GU591328
Alveolata
Kryptoperidinium foliaceum CCMP1326 (GU591328)
20377
20450
+
Asp
GTC
[ENA]
¡û
>CHL1810013724
KJ958484
Stramenopiles
Cerataulina daemon (KJ958484)
5111
5036
-
Asp
GTC
[ENA]
¡û
>CHL1810059632
MG755808
Stramenopiles
Acanthoceras zachariasii (MG755808)
57530
57605
+
Asp
GTC
[ENA]
¡û
Identical group No.430612 (1 seq.)
>CHL090103194
U87145
Alveolata
Toxoplasma gondii
6720
6793
+
Asp
GTC
[ENA]
¡û
Identical group No.480780 (1 seq.)
>CHL1810003210
HM222968
Alveolata
Chromerida sp. RM11 (HM222968)
55845
55773
-
Asp
GTC
[ENA]
¡û
Identical group No.770453 (1 seq.)
>CHL1810046777
LC008447
Alveolata
Lepidodinium chlorophorum (LC008447)
42392
42465
+
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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