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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Alveolata
Anticodon = GTT
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.480775 (2 seq.)
>CHL1810003187
HM222968
Alveolata
Chromerida sp. RM11 (HM222968)
73687
73760
+
Asn
GTT
[ENA]
¡û
>CHL1810003197
HM222968
Alveolata
Chromerida sp. RM11 (HM222968)
70070
69997
-
Asn
GTT
[ENA]
¡û
Identical group No.541105 (2 seq.)
>CHL090101370
AY217738
Alveolata
Eimeria tenella
1905
1979
+
Asn
GTT
[ENA]
¡û
>CHL090101389
AY217738
Alveolata
Eimeria tenella
32817
32743
-
Asn
GTT
[ENA]
¡û
Identical group No.629581 (2 seq.)
>CHL090103187
U87145
Alveolata
Toxoplasma gondii
1908
1980
+
Asn
GTT
[ENA]
¡û
>CHL090103202
U87145
Alveolata
Toxoplasma gondii
33089
33017
-
Asn
GTT
[ENA]
¡û
Identical group No.662355 (29 seq.)
>WENV180103666
OAPB01000051
[OAPB] marine metagenome; Sterile flask
3849
3778
-
Asn
GTT
[ENA]
¢þ
>WENV180111669
OAPN01134917
[OAPN] marine metagenome; 2011
217
145
-
Asn
GTT
[ENA]
¢þ
>WENV180374553
OBOK01000170
[OBOK] marine metagenome; seawater
501
572
+
Asn
GTT
[ENA]
¢þ
>WENV180386647
OBPC01042234
[OBPC] marine metagenome; Sterile flask
259
330
+
Asn
GTT
[ENA]
¢þ
>WENV180387496
OBPF01002929
[OBPF] marine metagenome; Sterile flask
18
89
+
Asn
GTT
[ENA]
¢þ
>WENV180388450
OBPH01007190
[OBPH] marine metagenome; Sterile flask
963
892
-
Asn
GTT
[ENA]
¢þ
>WENV180388841
OBPI01000328
[OBPI] marine metagenome; Sterile flask
22
93
+
Asn
GTT
[ENA]
¢þ
>WENV180389946
OBPK01006073
[OBPK] marine metagenome; Sterile flask
950
879
-
Asn
GTT
[ENA]
¢þ
>WENV180589536
OCOS01000007
[OCOS] marine metagenome; Sterile flask
10704
10775
+
Asn
GTT
[ENA]
¢þ
>WENV180637449
OCRG01022721
[OCRG] marine metagenome; seawater
48
119
+
Asn
GTT
[ENA]
¢þ
>WENV181322896
OFKV01010707
[OFKV] marine metagenome; sea ice
694
623
-
Asn
GTT
[ENA]
¢þ
>WENV181367128
OFPU01000522
[OFPU] freshwater metagenome; Freshwater Lake
96
169
+
Asn
GTT
[ENA]
¢þ
>WENV181370396
OFQS01008181
[OFQS] freshwater metagenome; Freshwater Lake
651
578
-
Asn
GTT
[ENA]
¢þ
>WENV181384150
OFRH01025212
[OFRH] wastewater metagenome; Exp Tend NO 100WW
278
349
+
Asn
GTT
[ENA]
¢þ
>WENV181392854
OFRX01010064
[OFRX] seawater metagenome; seawater
974
903
-
Asn
GTT
[ENA]
¢þ
>WENV183629215
OOGP01010098
[OOGP] marine metagenome; seawater
974
903
-
Asn
GTT
[ENA]
¢þ
>WENV170306983
CESJ01099382
[CESJ] marine metagenome genome assembly TARA_084_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
209
280
+
Asn
GTT
[ENA]
¢þ
>WENV170639259
JFJP01001713
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
5786
5715
-
Asn
GTT
[ENA]
¢þ
>WENV170643069
JFJP01049176
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
4023
3952
-
Asn
GTT
[ENA]
¢þ
>CHL1810002638
GU591327
Alveolata
Durinskia baltica CS-38 (GU591327)
70946
71017
+
Asn
GTT
[ENA]
¡û
>CHL1810002669
GU591328
Alveolata
Kryptoperidinium foliaceum CCMP1326 (GU591328)
133279
133208
-
Asn
GTT
[ENA]
¡û
>CHL1810008281
KC509520
Stramenopiles
Asterionellopsis glacialis ccmp1717 (KC509520)
131144
131073
-
Asn
GTT
[ENA]
¡û
>CHL1810013648
KJ958482
Stramenopiles
Rhizosolenia imbricata (KJ958482)
71767
71838
+
Asn
GTT
[ENA]
¡û
>CHL1810013654
KJ958482
Stramenopiles
Rhizosolenia imbricata (KJ958482)
110434
110363
-
Asn
GTT
[ENA]
¡û
>CHL1810013743
KJ958485
Stramenopiles
Thalassiosira weissflogii (KJ958485)
108883
108810
-
Asn
GTT
[ENA]
¡û
>CHL1810059256
MG755792
Stramenopiles
Plagiogramma staurophorum (MG755792)
164338
164267
-
Asn
GTT
[ENA]
¡û
>CHL1810059417
MG755800
Stramenopiles
Entomoneis sp. (MG755800)
103226
103155
-
Asn
GTT
[ENA]
¡û
>CHL1810059501
MG755803
Stramenopiles
Psammoneis obaidii (MG755803)
97402
97474
+
Asn
GTT
[ENA]
¡û
>CHL1810059535
MG755804
Stramenopiles
Cyclotella pseudostelligera (MG755804)
109938
109865
-
Asn
GTT
[ENA]
¡û
Identical group No.770451 (1 seq.)
>CHL1810046771
LC008447
Alveolata
Lepidodinium chlorophorum (LC008447)
35610
35683
+
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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