This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Alveolata
Anticodon = TAA
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.24299 (1 seq.)
>CHL090101376
AY217738
Alveolata
Eimeria tenella
6114
6204
+
Leu
TAA
[ENA]
¡û
Identical group No.75289 (14 seq.)
>WENV180015250
FQKF010457752
[FQKF] soil metagenome; Soil
86
1
-
Leu
TAA
[ENA]
¢þ
>WENV180038841
LLBY010007956
[LLBY] soil metagenome; soil from tomato rhizosphere
22556
22643
+
Leu
TAA
[ENA]
¢þ
>WENV180040832
LLBZ010016014
[LLBZ] soil metagenome; soil from tomato rhizosphere
2761
2674
-
Leu
TAA
[ENA]
¢þ
>WENV180310118
OBJS01234532
[OBJS] beach sand metagenome; beach sand
69
157
+
Leu
TAA
[ENA]
¢þ
>WENV181385842
OFRK01020870
[OFRK] marine metagenome; sea ice
112
197
+
Leu
TAA
[ENA]
¢þ
>WENV183615000
OOEA01027283
[OOEA] marine metagenome; sea ice
276
361
+
Leu
TAA
[ENA]
¢þ
>WENV183621797
OOFU01063293
[OOFU] marine metagenome; sea ice
244
159
-
Leu
TAA
[ENA]
¢þ
>WENV183628336
OOGN01011301
[OOGN] marine metagenome; sea ice
285
200
-
Leu
TAA
[ENA]
¢þ
>WENV170604383
FUWD010391868
[FUWD] metagenome; unknown
238
325
+
Leu
TAA
[ENA]
¢þ
>WENV170639231
JFJP01001703
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
6014
6099
+
Leu
TAA
[ENA]
¢þ
>CHL1810002641
GU591327
Alveolata
Durinskia baltica CS-38 (GU591327)
106399
106486
+
Leu
TAA
[ENA]
¡û
>CHL1810002665
GU591328
Alveolata
Kryptoperidinium foliaceum CCMP1326 (GU591328)
100736
100821
+
Leu
TAA
[ENA]
¡û
>CHL1810059419
MG755800
Stramenopiles
Entomoneis sp. (MG755800)
98382
98297
-
Leu
TAA
[ENA]
¡û
>CHL090102736
EF067920
stramenopiles
Phaeodactylum tricornutum
104560
104475
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK