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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
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Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Alveolata
Anticodon = TAG
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.130241 (2 seq.)
>CHL090101387
AY217738
Alveolata
Eimeria tenella
32634
32717
+
Leu
TAG
[ENA]
¡û
>CHL090101397
AY217738
Alveolata
Eimeria tenella
2088
2005
-
Leu
TAG
[ENA]
¡û
Identical group No.185405 (2 seq.)
>CHL1810003194
HM222968
Alveolata
Chromerida sp. RM11 (HM222968)
84877
84958
+
Leu
TAG
[ENA]
¡û
>CHL1810003204
HM222968
Alveolata
Chromerida sp. RM11 (HM222968)
58880
58799
-
Leu
TAG
[ENA]
¡û
Identical group No.202733 (1 seq.)
>CHL1810002671
GU591328
Alveolata
Kryptoperidinium foliaceum CCMP1326 (GU591328)
125034
124953
-
Leu
TAG
[ENA]
¡û
Identical group No.211463 (1 seq.)
>CHL1810002639
GU591327
Alveolata
Durinskia baltica CS-38 (GU591327)
72881
72964
+
Leu
TAG
[ENA]
¡û
Identical group No.227770 (1 seq.)
>CHL1810046774
LC008447
Alveolata
Lepidodinium chlorophorum (LC008447)
35968
36048
+
Leu
TAG
[ENA]
¡û
Identical group No.239901 (2 seq.)
>CHL090103200
U87145
Alveolata
Toxoplasma gondii
32918
32995
+
Leu
TAG
[ENA]
¡û
>CHL090103208
U87145
Alveolata
Toxoplasma gondii
2079
2002
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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