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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Alveolata
Anticodon = TGA
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.32595 (1 seq.)
>CHL1810003215
HM222968
Alveolata
Chromerida sp. RM11 (HM222968)
15880
15793
-
Ser
TGA
[ENA]
¡û
Identical group No.39640 (3 seq.)
>WENV180376349
OBOM01002569
[OBOM] marine metagenome; Seawater
778
691
-
Ser
TGA
[ENA]
¢þ
>WENV180381709
OBOS01011335
[OBOS] marine metagenome; ENVO 00002150
452
539
+
Ser
TGA
[ENA]
¢þ
>CHL1810002676
GU591328
Alveolata
Kryptoperidinium foliaceum CCMP1326 (GU591328)
26476
26389
-
Ser
TGA
[ENA]
¡û
Identical group No.43139 (1 seq.)
>CHL1810002650
GU591327
Alveolata
Durinskia baltica CS-38 (GU591327)
23906
23819
-
Ser
TGA
[ENA]
¡û
Identical group No.130240 (1 seq.)
>CHL090101384
AY217738
Alveolata
Eimeria tenella
18759
18844
+
Ser
TGA
[ENA]
¡û
Identical group No.148566 (1 seq.)
>CHL090103198
U87145
Alveolata
Toxoplasma gondii
19023
19106
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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