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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Alveolata
Anticodon = TGC
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.467517 (54 seq.)
>WENV180047684
MPLT02253983
[MPLT] marine metagenome; 70 m water sample filtered on 0.2 um supor filter
401
328
-
Ala
TGC
[ENA]
¢þ
>WENV180111821
OAPO01002162
[OAPO] marine metagenome; ENVO:00002010
571
644
+
Ala
TGC
[ENA]
¢þ
>WENV180357997
OBNO01043135
[OBNO] marine metagenome; ENVO 00002150
237
164
-
Ala
TGC
[ENA]
¢þ
>WENV180381421
OBOR01289905
[OBOR] marine metagenome; ENVO 00002227
348
276
-
Ala
TGC
[ENA]
¢þ
>WENV180383852
OBOV01044189
[OBOV] marine metagenome; ENV:00002010
47
120
+
Ala
TGC
[ENA]
¢þ
>WENV180391996
OBPO01000805
[OBPO] marine metagenome; seawater
2573
2500
-
Ala
TGC
[ENA]
¢þ
>WENV180395306
OBPT01007516
[OBPT] marine metagenome; ENVO:00002010 seawater
72
145
+
Ala
TGC
[ENA]
¢þ
>WENV180398948
OBQE01000882
[OBQE] marine metagenome; ENVO.00002150
454
381
-
Ala
TGC
[ENA]
¢þ
>WENV180585088
OCOK01002093
[OCOK] marine metagenome; ENVO:00002010
340
267
-
Ala
TGC
[ENA]
¢þ
>WENV180587675
OCOO01026710
[OCOO] marine metagenome; seawater
302
229
-
Ala
TGC
[ENA]
¢þ
>WENV180589170
OCOR01003992
[OCOR] marine metagenome; ENVO:00002042
130
57
-
Ala
TGC
[ENA]
¢þ
>WENV180650340
OCSY01010252
[OCSY] marine metagenome; 30 L Plastic container
194
267
+
Ala
TGC
[ENA]
¢þ
>WENV181321425
OFKM01000145
[OFKM] marine metagenome; sea ice
2965
2892
-
Ala
TGC
[ENA]
¢þ
>WENV181322002
OFKP01000081
[OFKP] marine metagenome; sea ice
1817
1890
+
Ala
TGC
[ENA]
¢þ
>WENV181323033
OFKW01000546
[OFKW] marine metagenome; sea ice
2285
2212
-
Ala
TGC
[ENA]
¢þ
>WENV181323460
OFKY01000162
[OFKY] marine metagenome; sea ice
48
121
+
Ala
TGC
[ENA]
¢þ
>WENV181323702
OFKZ01000090
[OFKZ] marine metagenome; sea ice
3775
3702
-
Ala
TGC
[ENA]
¢þ
>WENV181324706
OFLH01000088
[OFLH] marine metagenome; sea ice
1701
1774
+
Ala
TGC
[ENA]
¢þ
>WENV181325146
OFLI01010163
[OFLI] seawater metagenome; seawater
782
709
-
Ala
TGC
[ENA]
¢þ
>WENV182566334
OJEK01000944
[OJEK] seawater metagenome; Sea water
1554
1481
-
Ala
TGC
[ENA]
¢þ
>WENV182592045
OJIP01014711
[OJIP] seawater metagenome; Sea water
104
177
+
Ala
TGC
[ENA]
¢þ
>WENV183053980
OLGR01003823
[OLGR] seawater metagenome; Sea water
600
673
+
Ala
TGC
[ENA]
¢þ
>WENV183055515
OLHD01000208
[OLHD] seawater metagenome; Sea water
2586
2513
-
Ala
TGC
[ENA]
¢þ
>WENV183059918
OLHW01000389
[OLHW] seawater metagenome; Sea water
3594
3521
-
Ala
TGC
[ENA]
¢þ
>WENV183615258
OOEB01000060
[OOEB] marine metagenome; sea ice
2210
2283
+
Ala
TGC
[ENA]
¢þ
>WENV183618628
OOFO01012635
[OOFO] marine metagenome; seawater
723
650
-
Ala
TGC
[ENA]
¢þ
>WENV183620344
OOFR01036841
[OOFR] marine metagenome; seawater
592
519
-
Ala
TGC
[ENA]
¢þ
>WENV183620997
OOFT01001921
[OOFT] marine metagenome; sea ice
1478
1405
-
Ala
TGC
[ENA]
¢þ
>WENV183625542
OOGG01000189
[OOGG] marine metagenome; sea ice
1676
1749
+
Ala
TGC
[ENA]
¢þ
>WENV183626578
OOGJ01000360
[OOGJ] marine metagenome; seawater
394
321
-
Ala
TGC
[ENA]
¢þ
>WENV183627307
OOGL01000097
[OOGL] marine metagenome; sea ice
4158
4085
-
Ala
TGC
[ENA]
¢þ
>WENV183628193
OOGM01044793
[OOGM] marine metagenome; sea ice
526
453
-
Ala
TGC
[ENA]
¢þ
>WENV183628477
OOGN01066026
[OOGN] marine metagenome; sea ice
231
304
+
Ala
TGC
[ENA]
¢þ
>WENV170597779
FUWD010014144
[FUWD] metagenome; unknown
521
594
+
Ala
TGC
[ENA]
¢þ
>WENV170615248
FUWD012852611
[FUWD] metagenome; unknown
724
651
-
Ala
TGC
[ENA]
¢þ
>WENV170619524
FUWD013015675
[FUWD] metagenome; unknown
223
296
+
Ala
TGC
[ENA]
¢þ
>WENV170627629
FUWD013234341
[FUWD] metagenome; unknown
223
296
+
Ala
TGC
[ENA]
¢þ
>CHL1810002663
GU591328
Alveolata
Kryptoperidinium foliaceum CCMP1326 (GU591328)
74094
74167
+
Ala
TGC
[ENA]
¡û
>CHL1810002668
GU591328
Alveolata
Kryptoperidinium foliaceum CCMP1326 (GU591328)
138204
138131
-
Ala
TGC
[ENA]
¡û
>CHL1810008331
KC509522
Stramenopiles
Cylindrotheca closterium ccmp1855 (KC509522)
93176
93249
+
Ala
TGC
[ENA]
¡û
>CHL1810008337
KC509522
Stramenopiles
Cylindrotheca closterium ccmp1855 (KC509522)
154890
154817
-
Ala
TGC
[ENA]
¡û
>CHL1810019294
KR709240
Stramenopiles
Pseudo-nitzschia multiseries (KR709240)
42874
42801
-
Ala
TGC
[ENA]
¡û
>CHL1810059338
MG755796
Stramenopiles
Guinardia striata (MG755796)
115313
115240
-
Ala
TGC
[ENA]
¡û
>CHL1810059343
MG755796
Stramenopiles
Guinardia striata (MG755796)
64661
64588
-
Ala
TGC
[ENA]
¡û
>CHL1810059363
MG755798
Stramenopiles
Attheya longicornis (MG755798)
70788
70861
+
Ala
TGC
[ENA]
¡û
>CHL1810059366
MG755798
Stramenopiles
Attheya longicornis (MG755798)
124068
123995
-
Ala
TGC
[ENA]
¡û
>CHL1810059415
MG755800
Stramenopiles
Entomoneis sp. (MG755800)
118495
118568
+
Ala
TGC
[ENA]
¡û
>CHL1810059423
MG755800
Stramenopiles
Entomoneis sp. (MG755800)
67676
67603
-
Ala
TGC
[ENA]
¡û
>CHL1810059499
MG755803
Stramenopiles
Psammoneis obaidii (MG755803)
87813
87886
+
Ala
TGC
[ENA]
¡û
>CHL1810059504
MG755803
Stramenopiles
Psammoneis obaidii (MG755803)
155021
154948
-
Ala
TGC
[ENA]
¡û
>CHL1810059556
MG755805
Stramenopiles
Biddulphia biddulphiana (MG755805)
68552
68625
+
Ala
TGC
[ENA]
¡û
>CHL1810059559
MG755805
Stramenopiles
Biddulphia biddulphiana (MG755805)
117189
117116
-
Ala
TGC
[ENA]
¡û
>CHL090102729
EF067920
stramenopiles
Phaeodactylum tricornutum
66899
66972
+
Ala
TGC
[ENA]
¡û
>CHL090102734
EF067920
stramenopiles
Phaeodactylum tricornutum
114145
114072
-
Ala
TGC
[ENA]
¡û
Identical group No.480776 (2 seq.)
>CHL1810003190
HM222968
Alveolata
Chromerida sp. RM11 (HM222968)
81937
82010
+
Ala
TGC
[ENA]
¡û
>CHL1810003200
HM222968
Alveolata
Chromerida sp. RM11 (HM222968)
61820
61747
-
Ala
TGC
[ENA]
¡û
Identical group No.520390 (9 seq.)
>WENV180082128
MPMC02187665
[MPMC] marine metagenome; 100 m water sample filtered on 30 um supor filter
3046
3119
+
Ala
TGC
[ENA]
¢þ
>WENV181372219
OFQW01030922
[OFQW] wastewater metagenome; Exp Tend NO 90WW
220
293
+
Ala
TGC
[ENA]
¢þ
>WENV183807782
PVBE011230971
[PVBE] marine metagenome; water
735
808
+
Ala
TGC
[ENA]
¢þ
>CHL1810002637
GU591327
Alveolata
Durinskia baltica CS-38 (GU591327)
66055
66128
+
Ala
TGC
[ENA]
¡û
>CHL1810002644
GU591327
Alveolata
Durinskia baltica CS-38 (GU591327)
112939
112866
-
Ala
TGC
[ENA]
¡û
>CHL1810008306
KC509521
Stramenopiles
Coscinodiscus radiatus ccmp310 (KC509521)
67142
67215
+
Ala
TGC
[ENA]
¡û
>CHL1810008309
KC509521
Stramenopiles
Coscinodiscus radiatus ccmp310 (KC509521)
115474
115401
-
Ala
TGC
[ENA]
¡û
>CHL1810059389
MG755799
Stramenopiles
Actinocyclus subtilis (MG755799)
65548
65621
+
Ala
TGC
[ENA]
¡û
>CHL1810059392
MG755799
Stramenopiles
Actinocyclus subtilis (MG755799)
112613
112540
-
Ala
TGC
[ENA]
¡û
Identical group No.541126 (2 seq.)
>CHL090300001
AY217738
Alveolata
Eimeria tenella
32837
32909
+
Ala
TGC
[ENA]
¡û
>CHL090300002
AY217738
Alveolata
Eimeria tenella
1885
1813
-
Ala
TGC
[ENA]
¡û
Identical group No.629584 (2 seq.)
>CHL090103201
U87145
Alveolata
Toxoplasma gondii
33130
33202
+
Ala
TGC
[ENA]
¡û
>CHL090103209
U87145
Alveolata
Toxoplasma gondii
1867
1795
-
Ala
TGC
[ENA]
¡û
Identical group No.770450 (1 seq.)
>CHL1810046767
LC008447
Alveolata
Lepidodinium chlorophorum (LC008447)
10629
10700
+
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK