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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Alveolata
Anticodon = TGG
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.297389 (1 seq.)
>CHL1810003183
HM222968
Alveolata
Chromerida sp. RM11 (HM222968)
36114
36187
+
Pro
TGG
[ENA]
¡û
Identical group No.297448 (37 seq.)
>WENV180368989
OBOG01013528
[OBOG] marine metagenome; seawater
192
267
+
Pro
TGG
[ENA]
¢þ
>WENV180381501
OBOS01000314
[OBOS] marine metagenome; ENVO 00002150
402
327
-
Pro
TGG
[ENA]
¢þ
>WENV180391999
OBPO01001124
[OBPO] marine metagenome; seawater
121
46
-
Pro
TGG
[ENA]
¢þ
>WENV180636754
OCRF01055848
[OCRF] marine metagenome; niskin bottle
285
360
+
Pro
TGG
[ENA]
¢þ
>WENV181092721
OEBK01037536
[OEBK] marine metagenome; ENVO:00002010 for 'seawater
16
91
+
Pro
TGG
[ENA]
¢þ
>WENV181162691
OEIO01006836
[OEIO] marine metagenome; sea ice
611
686
+
Pro
TGG
[ENA]
¢þ
>WENV181322379
OFKR01000283
[OFKR] marine metagenome; sea ice
1346
1271
-
Pro
TGG
[ENA]
¢þ
>WENV181324229
OFLD01000027
[OFLD] marine metagenome; sea ice
99
174
+
Pro
TGG
[ENA]
¢þ
>WENV183615389
OOEB01011064
[OOEB] marine metagenome; sea ice
454
379
-
Pro
TGG
[ENA]
¢þ
>WENV183616746
OOEE01000153
[OOEE] marine metagenome; sea ice
2804
2879
+
Pro
TGG
[ENA]
¢þ
>WENV183617442
OOEG01000056
[OOEG] marine metagenome; sea ice
5305
5230
-
Pro
TGG
[ENA]
¢þ
>WENV183617682
OOEG01041810
[OOEG] marine metagenome; sea ice
431
506
+
Pro
TGG
[ENA]
¢þ
>WENV183621384
OOFU01000067
[OOFU] marine metagenome; sea ice
8629
8554
-
Pro
TGG
[ENA]
¢þ
>WENV183622550
OOFV01085197
[OOFV] marine metagenome; seawater
206
281
+
Pro
TGG
[ENA]
¢þ
>WENV183622780
OOFW01009096
[OOFW] marine metagenome; sea ice
274
199
-
Pro
TGG
[ENA]
¢þ
>WENV183623340
OOFY01000001
[OOFY] marine metagenome; sea ice
8023
7948
-
Pro
TGG
[ENA]
¢þ
>WENV183623441
OOGA01001280
[OOGA] marine metagenome; sea ice
1032
1107
+
Pro
TGG
[ENA]
¢þ
>WENV183624663
OOGE01000106
[OOGE] marine metagenome; sea ice
3581
3656
+
Pro
TGG
[ENA]
¢þ
>WENV183627967
OOGM01000029
[OOGM] marine metagenome; sea ice
1319
1394
+
Pro
TGG
[ENA]
¢þ
>WENV183628231
OOGN01000300
[OOGN] marine metagenome; sea ice
3187
3262
+
Pro
TGG
[ENA]
¢þ
>WENV183628290
OOGN01004854
[OOGN] marine metagenome; sea ice
23
98
+
Pro
TGG
[ENA]
¢þ
>WENV183628508
OOGO01000222
[OOGO] marine metagenome; sea ice
7416
7491
+
Pro
TGG
[ENA]
¢þ
>WENV170343145
CETD01316157
[CETD] marine metagenome genome assembly TARA_110_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
123
48
-
Pro
TGG
[ENA]
¢þ
>WENV170440887
CEUV01137130
[CEUV] marine metagenome genome assembly TARA_123_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1678
1603
-
Pro
TGG
[ENA]
¢þ
>WENV170569648
FLMP01260897
[FLMP] seawater metagenome; seawater
423
498
+
Pro
TGG
[ENA]
¢þ
>WENV170594098
FUFK011176812
[FUFK] metagenome; unknown
186
112
-
Pro
TGG
[ENA]
¢þ
>WENV170634377
FYBJ01000767
[FYBJ] marine metagenome; marine
353
428
+
Pro
TGG
[ENA]
¢þ
>WENV170639262
JFJP01001717
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
3100
3176
+
Pro
TGG
[ENA]
¢þ
>WENV170901120
MDTD01165221
[MDTD] marine metagenome; seawater
2353
2278
-
Pro
TGG
[ENA]
¢þ
>WENV170939876
MDTG01333555
[MDTG] marine metagenome; seawater
2177
2102
-
Pro
TGG
[ENA]
¢þ
>CHL1810002653
GU591328
Alveolata
Kryptoperidinium foliaceum CCMP1326 (GU591328)
12498
12573
+
Pro
TGG
[ENA]
¡û
>CHL1810002672
GU591328
Alveolata
Kryptoperidinium foliaceum CCMP1326 (GU591328)
65462
65387
-
Pro
TGG
[ENA]
¡û
>CHL1810005300
JQ088178
Stramenopiles
Ulnaria acus (JQ088178)
61979
62053
+
Pro
TGG
[ENA]
¡û
>CHL1810005306
JQ088178
Stramenopiles
Ulnaria acus (JQ088178)
115996
115922
-
Pro
TGG
[ENA]
¡û
>CHL1810008329
KC509522
Stramenopiles
Cylindrotheca closterium ccmp1855 (KC509522)
85799
85874
+
Pro
TGG
[ENA]
¡û
>CHL1810008335
KC509522
Stramenopiles
Cylindrotheca closterium ccmp1855 (KC509522)
162267
162192
-
Pro
TGG
[ENA]
¡û
>CHL1810019292
KR709240
Stramenopiles
Pseudo-nitzschia multiseries (KR709240)
46174
46101
-
Pro
TGG
[ENA]
¡û
Identical group No.352262 (1 seq.)
>CHL090101380
AY217738
Alveolata
Eimeria tenella
6835
6908
+
Pro
TGG
[ENA]
¡û
Identical group No.421698 (4 seq.)
>CHL1810002635
GU591327
Alveolata
Durinskia baltica CS-38 (GU591327)
62666
62741
+
Pro
TGG
[ENA]
¡û
>CHL1810002642
GU591327
Alveolata
Durinskia baltica CS-38 (GU591327)
116328
116253
-
Pro
TGG
[ENA]
¡û
>CHL090102727
EF067920
stramenopiles
Phaeodactylum tricornutum
63784
63859
+
Pro
TGG
[ENA]
¡û
>CHL090102732
EF067920
stramenopiles
Phaeodactylum tricornutum
117260
117185
-
Pro
TGG
[ENA]
¡û
Identical group No.430613 (1 seq.)
>CHL090103195
U87145
Alveolata
Toxoplasma gondii
7000
7075
+
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK