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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Alveolata
Anticodon = TTG
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.667331 (20 seq.)
>WENV180038845
LLBY010007956
[LLBY] soil metagenome; soil from tomato rhizosphere
1909
1836
-
Gln
TTG
[ENA]
¢þ
>WENV180107066
OAPF01026141
[OAPF] marine metagenome; ENVO:00002010
465
538
+
Gln
TTG
[ENA]
¢þ
>WENV181162627
OEIO01003090
[OEIO] marine metagenome; sea ice
1002
1075
+
Gln
TTG
[ENA]
¢þ
>WENV181304947
OFIE01001373
[OFIE] marine metagenome; sea ice
873
946
+
Gln
TTG
[ENA]
¢þ
>WENV181309877
OFIY01000188
[OFIY] marine metagenome; sea ice
1618
1691
+
Gln
TTG
[ENA]
¢þ
>WENV181315084
OFJM01002008
[OFJM] marine metagenome; sea ice
221
294
+
Gln
TTG
[ENA]
¢þ
>WENV181392852
OFRX01009930
[OFRX] seawater metagenome; seawater
165
238
+
Gln
TTG
[ENA]
¢þ
>WENV181415619
OGCL01016665
[OGCL] hot springs metagenome; Hot spring water
741
670
-
Gln
TTG
[ENA]
¢þ
>WENV183615879
OOEC01000407
[OOEC] marine metagenome; sea ice
1444
1517
+
Gln
TTG
[ENA]
¢þ
>WENV183616731
OOEE01000017
[OOEE] marine metagenome; sea ice
15870
15943
+
Gln
TTG
[ENA]
¢þ
>WENV183623005
OOFX01001436
[OOFX] marine metagenome; sea ice
937
864
-
Gln
TTG
[ENA]
¢þ
>WENV183628670
OOGO01006572
[OOGO] marine metagenome; sea ice
589
662
+
Gln
TTG
[ENA]
¢þ
>WENV183629213
OOGP01009957
[OOGP] marine metagenome; seawater
165
238
+
Gln
TTG
[ENA]
¢þ
>WENV183630773
OOGU01001899
[OOGU] marine metagenome; sea ice
453
380
-
Gln
TTG
[ENA]
¢þ
>WENV170639233
JFJP01001703
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
26418
26491
+
Gln
TTG
[ENA]
¢þ
>WENV170850249
MDTA01110856
[MDTA] marine metagenome; seawater
1359
1286
-
Gln
TTG
[ENA]
¢þ
>CHL1810000392
AP011960
Stramenopiles
Fistulifera solaris JPCC DA0580 (AP011960)
67929
68002
+
Gln
TTG
[ENA]
¡û
>CHL1810002670
GU591328
Alveolata
Kryptoperidinium foliaceum CCMP1326 (GU591328)
128888
128816
-
Gln
TTG
[ENA]
¡û
>CHL1810008339
KC509522
Stramenopiles
Cylindrotheca closterium ccmp1855 (KC509522)
134468
134395
-
Gln
TTG
[ENA]
¡û
>CHL1810059420
MG755800
Stramenopiles
Entomoneis sp. (MG755800)
78252
78181
-
Gln
TTG
[ENA]
¡û
Identical group No.669993 (1 seq.)
>CHL1810003212
HM222968
Alveolata
Chromerida sp. RM11 (HM222968)
50932
50861
-
Gln
TTG
[ENA]
¡û
Identical group No.706696 (1 seq.)
>CHL090101381
AY217738
Alveolata
Eimeria tenella
14921
14994
+
Gln
TTG
[ENA]
¡û
Identical group No.755915 (1 seq.)
>CHL1810002645
GU591327
Alveolata
Durinskia baltica CS-38 (GU591327)
86424
86351
-
Gln
TTG
[ENA]
¡û
Identical group No.762134 (1 seq.)
>CHL090103196
U87145
Alveolata
Toxoplasma gondii
15240
15313
+
Gln
TTG
[ENA]
¡û
Identical group No.833184 (1 seq.)
>CHL1810046781
LC008447
Alveolata
Lepidodinium chlorophorum (LC008447)
64170
64098
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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