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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Alveolata
Anticodon = TTT
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.669991 (2 seq.)
>CHL1810003191
HM222968
Alveolata
Chromerida sp. RM11 (HM222968)
82019
82090
+
Lys
TTT
[ENA]
¡û
>CHL1810003201
HM222968
Alveolata
Chromerida sp. RM11 (HM222968)
61738
61667
-
Lys
TTT
[ENA]
¡û
Identical group No.706698 (1 seq.)
>CHL090101394
AY217738
Alveolata
Eimeria tenella
6722
6651
-
Lys
TTT
[ENA]
¡û
Identical group No.726003 (1 seq.)
>CHL1810002654
GU591328
Alveolata
Kryptoperidinium foliaceum CCMP1326 (GU591328)
14882
14953
+
Lys
TTT
[ENA]
¡û
Identical group No.755914 (1 seq.)
>CHL1810002627
GU591327
Alveolata
Durinskia baltica CS-38 (GU591327)
12781
12854
+
Lys
TTT
[ENA]
¡û
Identical group No.762136 (1 seq.)
>CHL090103206
U87145
Alveolata
Toxoplasma gondii
6896
6825
-
Lys
TTT
[ENA]
¡û
Identical group No.770475 (1 seq.)
>CHL1830002021
LC008447
Alveolata
Lepidodinium chlorophorum (LC008447)
35695
35766
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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