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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Aquificota
Anticodon = GAC
HIT:
16 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.352995 (4 seq.)
>W143017254
JNLJ01000001
Aquificota
Persephonella sp. IF05-L8 [JNLJ]
804238
804311
+
Val
GAC
[ENA]
¡û
>W143017261
JNLL01000001
Aquificota
Persephonella sp. KM09-Lau-8 [JNLL]
1797025
1797099
+
Val
GAC
[ENA]
¡û
>W1930033929
OBEI01000012
Aquificota
Persephonella hydrogeniphila DSM 15103 [OBEI]
314
389
+
Val
GAC
[ENA]
¡û
>C09300146
CP001230
Aquificota
Persephonella marina EX-H1 [CP001230]
1120217
1120292
+
Val
GAC
[Ensembl]
¡û
Identical group No.460868 (8 seq.)
>C08012589
CP001130
Aquificota
Hydrogenobaculum sp. Y04AAS1 [CP001130]
1160374
1160446
+
Val
GAC
[Ensembl]
¡û
>W09300132
ABFI01000027
Aquificota
Hydrogenobaculum sp. Y04AAS1 [ABFI]
8536
8464
-
Val
GAC
[ENA]
¡û
>C153000098
CP002726
Aquificota
Hydrogenobaculum sp. 3684 [CP002726]
1157753
1157825
+
Val
GAC
[Ensembl]
¡û
>C153000099
CP002809
Aquificota
Hydrogenobaculum sp. SHO [CP002809]
1157865
1157937
+
Val
GAC
[Ensembl]
¡û
>W10300395
ADJO01000001
Aquificota
Hydrogenobaculum sp. SN [ADJO]
65818
65746
-
Val
GAC
[ENA]
¡û
>W11300501
ADJO01000001
Aquificota
Hydrogenobaculum sp. SN [ADJO]
65818
65746
-
Val
GAC
[ENA]
¡û
>C133000276
CP004347
Aquificota
Hydrogenobaculum sp. HO [CP004347]
1157942
1158014
+
Val
GAC
[Ensembl]
¡û
>C133000281
CP004390
Aquificota
Hydrogenobaculum sp. SN [CP004390]
1157909
1157981
+
Val
GAC
[Ensembl]
¡û
Identical group No.460869 (3 seq.)
>C08012694
CP001080
Aquificota
Sulfurihydrogenibium sp. YO3AOP1 [CP001080]
52241
52168
-
Val
GAC
[Ensembl]
¡û
>W09300141
ABLS01000004
Aquificota
Sulfurihydrogenibium sp. YO3AOP1 [ABLS]
12395
12468
+
Val
GAC
[ENA]
¡û
>W09300317
ABZS01000190
Aquificota
Sulfurihydrogenibium yellowstonense SS-5 [ABZS]
650
723
+
Val
GAC
[ENA]
¡û
Identical group No.540946 (1 seq.)
>W08012762
ABHJ01000014
Aquificota
Hydrogenivirga sp. 128-5-R1-1 [ABHJ]
30875
30800
-
Val
GAC
[ENA]
¡û
Identical group No.565337 (1 seq.)
>W143017148
JNIE01000008
Aquificota
Thermocrinis jamiesonii GBS [JNIE]
10050
9978
-
Val
GAC
[ENA]
¡û
Identical group No.614163 (2 seq.)
>W143014771
JHUV01000008
Aquificota
Sulfurihydrogenibium subterraneum DSM 15120 [JHUV]
103710
103784
+
Val
GAC
[ENA]
¡û
>C09300151
CP001229
Aquificota
Sulfurihydrogenibium azorense Az-Fu1 [CP001229]
703746
703672
-
Val
GAC
[Ensembl]
¡û
Identical group No.614180 (1 seq.)
>C10300245
CP001931
Aquificota
Thermocrinis albus DSM 14484 [CP001931]
345113
345185
+
Val
GAC
[Ensembl]
¡û
Identical group No.648765 (1 seq.)
>C143000173
CP007028
Aquificota
Thermocrinis ruber DSM 23557 [CP007028]
1370594
1370666
+
Val
GAC
-
¡û
Identical group No.648865 (1 seq.)
>C028065
AE000657
Aquificota
Aquifex aeolicus VF5 [AE000657]
730676
730601
-
Val
GAC
[Ensembl]
¡û
Identical group No.674027 (2 seq.)
>W1711589768
MOEN01000005
Aquificota
Desulfurobacterium indicum K6013 [MOEN]
19239
19313
+
Val
GAC
[ENA]
¡û
>W1910547771
FZOB01000001
Aquificota
Desulfurobacterium atlanticum DSM 15668 [FZOB]
4279
4205
-
Val
GAC
[ENA]
¡û
Identical group No.687851 (2 seq.)
>C10300137
AP011112
Aquificota
Hydrogenobacter thermophilus TK-6 [AP011112]
262815
262889
+
Val
GAC
-
¡û
>C11300280
CP002221
Aquificota
Hydrogenobacter thermophilus TK-6 [CP002221]
262805
262879
+
Val
GAC
-
¡û
Identical group No.691616 (14 seq.)
>WENV180275389
OBHT01020043
[OBHT] metagenome; hydrothermal vent
192
266
+
Val
GAC
[ENA]
¢þ
>WENV180287718
OBIL01000922
[OBIL] metagenome; hydrothermal vent
759
833
+
Val
GAC
[ENA]
¢þ
>WENV180288498
OBIL01197396
[OBIL] metagenome; hydrothermal vent
134
208
+
Val
GAC
[ENA]
¢þ
>WENV180299712
OBJC01095288
[OBJC] metagenome; water
54
128
+
Val
GAC
[ENA]
¢þ
>WENV180634627
OCRB01048895
[OCRB] metagenome; diffuse fluid
171
97
-
Val
GAC
[ENA]
¢þ
>WENV181212844
OFBU01000401
[OFBU] metagenome; hydrothermal vent
1619
1545
-
Val
GAC
[ENA]
¢þ
>WENV181213263
OFBV01000053
[OFBV] metagenome; hydrothermal vent
15665
15739
+
Val
GAC
[ENA]
¢þ
>WENV181213809
OFBW01000424
[OFBW] metagenome; hydrothermal vent
2240
2166
-
Val
GAC
[ENA]
¢þ
>WENV181214485
OFBY01000526
[OFBY] metagenome; hydrothermal vent
3274
3348
+
Val
GAC
[ENA]
¢þ
>WENV181215127
OFBZ01004401
[OFBZ] metagenome; hydrothermal vent
1434
1360
-
Val
GAC
[ENA]
¢þ
>WENV181215438
OFCA01000256
[OFCA] metagenome; hydrothermal vent
6645
6719
+
Val
GAC
[ENA]
¢þ
>WENV181215941
OFCB01000254
[OFCB] metagenome; hydrothermal vent
4542
4616
+
Val
GAC
[ENA]
¢þ
>WENV181225180
OFDH01010796
[OFDH] metagenome; hydrothermal vent
133
207
+
Val
GAC
[ENA]
¢þ
>C11107386
CP002543
Aquificota
Desulfurobacterium thermolithotrophum DSM 11699 [CP002543]
518121
518195
+
Val
GAC
[Ensembl]
¡û
Identical group No.739518 (1 seq.)
>C161000100
AP013035
Aquificota
Thermosulfidibacter takaii ABI70S6 [AP013035]
1334492
1334418
-
Val
GAC
[Ensembl]
¡û
Identical group No.741628 (1 seq.)
>W131217765
ATXC01000001
Aquificota
Desulfurobacterium sp. TC5-1 [ATXC]
143931
143857
-
Val
GAC
[ENA]
¡û
Identical group No.751432 (1 seq.)
>W1930033937
OBEN01000001
Aquificota
Hydrogenobacter hydrogenophilus DSM 2913 [OBEN]
203273
203199
-
Val
GAC
[ENA]
¡û
Identical group No.776316 (1 seq.)
>C11122324
CP002444
Aquificota
Thermovibrio ammonificans HB-1 [CP002444]
543189
543263
+
Val
GAC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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