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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Aquificota
Anticodon = GAT
HIT:
15 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.241799 (13 seq.)
>WENV181228703
OFEH01001369
[OFEH] hypersaline lake metagenome; Grendel Spring, Yellowstone National Park, Wyoming, USA
1692
1766
+
Ile
GAT
[ENA]
¢þ
>C08005592
CP001130
Aquificota
Hydrogenobaculum sp. Y04AAS1 [CP001130]
1252589
1252515
-
Ile
GAT
[Ensembl]
¡û
>C08005599
CP001130
Aquificota
Hydrogenobaculum sp. Y04AAS1 [CP001130]
789667
789593
-
Ile
GAT
[Ensembl]
¡û
>W09107143
ABFI01000022
Aquificota
Hydrogenobaculum sp. Y04AAS1 [ABFI]
16333
16407
+
Ile
GAT
[ENA]
¡û
>C151003663
CP002726
Aquificota
Hydrogenobaculum sp. 3684 [CP002726]
1243734
1243660
-
Ile
GAT
[Ensembl]
¡û
>C151003668
CP002726
Aquificota
Hydrogenobaculum sp. 3684 [CP002726]
775642
775568
-
Ile
GAT
[Ensembl]
¡û
>C151003707
CP002809
Aquificota
Hydrogenobaculum sp. SHO [CP002809]
1243604
1243530
-
Ile
GAT
[Ensembl]
¡û
>C151003712
CP002809
Aquificota
Hydrogenobaculum sp. SHO [CP002809]
775697
775623
-
Ile
GAT
[Ensembl]
¡û
>W10115215
ADJO01000021
Aquificota
Hydrogenobaculum sp. SN [ADJO]
3341
3267
-
Ile
GAT
[ENA]
¡û
>W11118801
ADJO01000021
Aquificota
Hydrogenobaculum sp. SN [ADJO]
3341
3267
-
Ile
GAT
[ENA]
¡û
>C131013407
CP004347
Aquificota
Hydrogenobaculum sp. HO [CP004347]
775670
775596
-
Ile
GAT
[Ensembl]
¡û
>C131013714
CP004390
Aquificota
Hydrogenobaculum sp. SN [CP004390]
1243891
1243817
-
Ile
GAT
[Ensembl]
¡û
>C131013719
CP004390
Aquificota
Hydrogenobaculum sp. SN [CP004390]
775636
775562
-
Ile
GAT
[Ensembl]
¡û
Identical group No.268668 (1 seq.)
>C133000277
CP004347
Aquificota
Hydrogenobaculum sp. HO [CP004347]
1243928
1243854
-
Ile
GAT
[Ensembl]
¡û
Identical group No.279463 (11 seq.)
>C08010700
CP001080
Aquificota
Sulfurihydrogenibium sp. YO3AOP1 [CP001080]
825281
825208
-
Ile
GAT
[Ensembl]
¡û
>C08010702
CP001080
Aquificota
Sulfurihydrogenibium sp. YO3AOP1 [CP001080]
753082
753009
-
Ile
GAT
[Ensembl]
¡û
>C08010705
CP001080
Aquificota
Sulfurihydrogenibium sp. YO3AOP1 [CP001080]
357650
357577
-
Ile
GAT
[Ensembl]
¡û
>W09107733
ABLS01000041
Aquificota
Sulfurihydrogenibium sp. YO3AOP1 [ABLS]
2877
2950
+
Ile
GAT
[ENA]
¡û
>W09114552
ABZS01000001
Aquificota
Sulfurihydrogenibium yellowstonense SS-5 [ABZS]
18833
18906
+
Ile
GAT
[ENA]
¡û
>W09114554
ABZS01000010
Aquificota
Sulfurihydrogenibium yellowstonense SS-5 [ABZS]
11801
11874
+
Ile
GAT
[ENA]
¡û
>W09114556
ABZS01000027
Aquificota
Sulfurihydrogenibium yellowstonense SS-5 [ABZS]
1633
1706
+
Ile
GAT
[ENA]
¡û
>W09114560
ABZS01000050
Aquificota
Sulfurihydrogenibium yellowstonense SS-5 [ABZS]
1633
1706
+
Ile
GAT
[ENA]
¡û
>W09114572
ABZS01000123
Aquificota
Sulfurihydrogenibium yellowstonense SS-5 [ABZS]
1633
1706
+
Ile
GAT
[ENA]
¡û
>ENV09004179
ADKJ01001085
Hot springs metagenome ctg_1106445192081
123
50
-
Ile
GAT
[ENA]
¡û
>ENV09004233
ADKK01000235
Hot springs metagenome ctg_1106445177583
79860
79933
+
Ile
GAT
[ENA]
¡û
Identical group No.306436 (2 seq.)
>W08004350
ABHJ01000047
Aquificota
Hydrogenivirga sp. 128-5-R1-1 [ABHJ]
4079
4006
-
Ile
GAT
[ENA]
¡û
>ENV09001845
ACQI01015816
Hydrothermal vent metagenome LCHCB.C1
340
413
+
Ile
GAT
[ENA]
¡û
Identical group No.324218 (2 seq.)
>C10107886
AP011112
Aquificota
Hydrogenobacter thermophilus TK-6 [AP011112]
246697
246624
-
Ile
GAT
-
¡û
>C11111359
CP002221
Aquificota
Hydrogenobacter thermophilus TK-6 [CP002221]
246687
246614
-
Ile
GAT
-
¡û
Identical group No.352104 (1 seq.)
>W08004312
ABHJ01000001
Aquificota
Hydrogenivirga sp. 128-5-R1-1 [ABHJ]
295014
295087
+
Ile
GAT
[ENA]
¡û
Identical group No.352943 (6 seq.)
>W141734143
JNLJ01000001
Aquificota
Persephonella sp. IF05-L8 [JNLJ]
474
547
+
Ile
GAT
[ENA]
¡û
>W141734167
JNLJ01000001
Aquificota
Persephonella sp. IF05-L8 [JNLJ]
584972
584899
-
Ile
GAT
[ENA]
¡û
>W141734176
JNLJ01000002
Aquificota
Persephonella sp. IF05-L8 [JNLJ]
631
558
-
Ile
GAT
[ENA]
¡û
>W141734253
JNLL01000001
Aquificota
Persephonella sp. KM09-Lau-8 [JNLL]
1760364
1760437
+
Ile
GAT
[ENA]
¡û
>W141734272
JNLL01000001
Aquificota
Persephonella sp. KM09-Lau-8 [JNLL]
324387
324314
-
Ile
GAT
[ENA]
¡û
>W1911493127
OBEI01000017
Aquificota
Persephonella hydrogeniphila DSM 15103 [OBEI]
3378
3305
-
Ile
GAT
[ENA]
¡û
Identical group No.353398 (11 seq.)
>WENV180013849
FPIC01004042
[FPIC] soil metagenome; Soil
338
265
-
Ile
GAT
[ENA]
¢þ
>WENV180036652
FVAA010237001
[FVAA] soil metagenome; Soil
150
75
-
Ile
GAT
[ENA]
¢þ
>WENV181223414
OFDC01012487
[OFDC] hot springs metagenome; Water
90
165
+
Ile
GAT
[ENA]
¢þ
>WENV181285370
OFGS01000056
[OFGS] hot springs metagenome; Water and soil
6402
6329
-
Ile
GAT
[ENA]
¢þ
>WENV181408802
OGCH01014972
[OGCH] hot springs metagenome; hot springs
280
207
-
Ile
GAT
[ENA]
¢þ
>WENV170574100
FLYM01005628
[FLYM] hot springs metagenome; Sediment
118
193
+
Ile
GAT
[ENA]
¢þ
>C141011706
CP007028
Aquificota
Thermocrinis ruber DSM 23557 [CP007028]
557192
557119
-
Ile
GAT
-
¡û
>ENV000336
AF352543
Environmental sample from ENV division of INSDC
88
164
+
Ile
GAT
[ENA]
>ENV000339
AF352545
Environmental sample from ENV division of INSDC
88
164
+
Ile
GAT
[ENA]
>ENV000341
AF352546
Environmental sample from ENV division of INSDC
88
164
+
Ile
GAT
[ENA]
>ENV000343
AF352547
Environmental sample from ENV division of INSDC
88
164
+
Ile
GAT
[ENA]
Identical group No.374132 (8 seq.)
>WENV181405062
OGCB01009391
[OGCB] hot springs metagenome; Octopus Spring Streamers, Yellowstone National Park, Wyoming, USA
1103
1030
-
Ile
GAT
[ENA]
¢þ
>W141730201
JNIE01000002
Aquificota
Thermocrinis jamiesonii GBS [JNIE]
341073
341000
-
Ile
GAT
[ENA]
¡û
>W1911493370
OBEN01000010
Aquificota
Hydrogenobacter hydrogenophilus DSM 2913 [OBEN]
55484
55409
-
Ile
GAT
[ENA]
¡û
>C10113043
CP001931
Aquificota
Thermocrinis albus DSM 14484 [CP001931]
855564
855489
-
Ile
GAT
[Ensembl]
¡û
>ENV000345
AF352548
Environmental sample from ENV division of INSDC
93
169
+
Ile
GAT
[ENA]
>ENV000347
AF352549
Environmental sample from ENV division of INSDC
93
169
+
Ile
GAT
[ENA]
>ENV000349
AF352550
Environmental sample from ENV division of INSDC
92
168
+
Ile
GAT
[ENA]
>ENV000351
AF352551
Environmental sample from ENV division of INSDC
94
170
+
Ile
GAT
[ENA]
Identical group No.382731 (1 seq.)
>C11107384
CP002543
Aquificota
Desulfurobacterium thermolithotrophum DSM 11699 [CP002543]
496712
496788
+
Ile
GAT
[Ensembl]
¡û
Identical group No.399031 (1 seq.)
>C161000094
AP013035
Aquificota
Thermosulfidibacter takaii ABI70S6 [AP013035]
1426703
1426628
-
Ile
GAT
[Ensembl]
¡û
Identical group No.408632 (2 seq.)
>C09108583
CP001230
Aquificota
Persephonella marina EX-H1 [CP001230]
1092792
1092866
+
Ile
GAT
[Ensembl]
¡û
>C09108602
CP001230
Aquificota
Persephonella marina EX-H1 [CP001230]
1852396
1852322
-
Ile
GAT
[Ensembl]
¡û
Identical group No.417081 (3 seq.)
>W141557064
JHUV01000009
Aquificota
Sulfurihydrogenibium subterraneum DSM 15120 [JHUV]
94062
94135
+
Ile
GAT
[ENA]
¡û
>C09109102
CP001229
Aquificota
Sulfurihydrogenibium azorense Az-Fu1 [CP001229]
828563
828636
+
Ile
GAT
[Ensembl]
¡û
>C09109113
CP001229
Aquificota
Sulfurihydrogenibium azorense Az-Fu1 [CP001229]
1525445
1525372
-
Ile
GAT
[Ensembl]
¡û
Identical group No.447150 (2 seq.)
>C11122335
CP002444
Aquificota
Thermovibrio ammonificans HB-1 [CP002444]
1606178
1606254
+
Ile
GAT
[Ensembl]
¡û
>C11122351
CP002444
Aquificota
Thermovibrio ammonificans HB-1 [CP002444]
1172066
1171990
-
Ile
GAT
[Ensembl]
¡û
Identical group No.447421 (2 seq.)
>C000011
AE000657
Aquificota
Aquifex aeolicus VF5 [AE000657]
1193760
1193833
+
Ile
GAT
[Ensembl]
¡û
>C000038
AE000657
Aquificota
Aquifex aeolicus VF5 [AE000657]
571094
571021
-
Ile
GAT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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