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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Aquificota
Anticodon = TTG
HIT:
11 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.460973 (10 seq.)
>WENV181228557
OFEH01000192
[OFEH] hypersaline lake metagenome; Grendel Spring, Yellowstone National Park, Wyoming, USA
14283
14211
-
Gln
TTG
[ENA]
¢þ
>WENV181406836
OGCG01001809
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
9274
9202
-
Gln
TTG
[ENA]
¢þ
>C08005602
CP001130
Aquificota
Hydrogenobaculum sp. Y04AAS1 [CP001130]
612365
612293
-
Gln
TTG
[Ensembl]
¡û
>W09107137
ABFI01000012
Aquificota
Hydrogenobaculum sp. Y04AAS1 [ABFI]
1271
1199
-
Gln
TTG
[ENA]
¡û
>C151003671
CP002726
Aquificota
Hydrogenobaculum sp. 3684 [CP002726]
615113
615041
-
Gln
TTG
[Ensembl]
¡û
>C151003715
CP002809
Aquificota
Hydrogenobaculum sp. SHO [CP002809]
615168
615096
-
Gln
TTG
[Ensembl]
¡û
>W10115205
ADJO01000006
Aquificota
Hydrogenobaculum sp. SN [ADJO]
40572
40500
-
Gln
TTG
[ENA]
¡û
>W11118791
ADJO01000006
Aquificota
Hydrogenobaculum sp. SN [ADJO]
40572
40500
-
Gln
TTG
[ENA]
¡û
>C131013410
CP004347
Aquificota
Hydrogenobaculum sp. HO [CP004347]
615141
615069
-
Gln
TTG
[Ensembl]
¡û
>C131013722
CP004390
Aquificota
Hydrogenobaculum sp. SN [CP004390]
615108
615036
-
Gln
TTG
[Ensembl]
¡û
Identical group No.510404 (3 seq.)
>W1911493340
OBEN01000001
Aquificota
Hydrogenobacter hydrogenophilus DSM 2913 [OBEN]
355139
355066
-
Gln
TTG
[ENA]
¡û
>C10107848
AP011112
Aquificota
Hydrogenobacter thermophilus TK-6 [AP011112]
119241
119313
+
Gln
TTG
-
¡û
>C11111321
CP002221
Aquificota
Hydrogenobacter thermophilus TK-6 [CP002221]
119230
119302
+
Gln
TTG
-
¡û
Identical group No.540929 (1 seq.)
>W08004342
ABHJ01000008
Aquificota
Hydrogenivirga sp. 128-5-R1-1 [ABHJ]
53529
53457
-
Gln
TTG
[ENA]
¡û
Identical group No.541892 (2 seq.)
>W141734147
JNLJ01000001
Aquificota
Persephonella sp. IF05-L8 [JNLJ]
343876
343951
+
Gln
TTG
[ENA]
¡û
>W141734262
JNLL01000001
Aquificota
Persephonella sp. KM09-Lau-8 [JNLL]
1870884
1870809
-
Gln
TTG
[ENA]
¡û
Identical group No.565283 (4 seq.)
>WENV181404620
OGCA01027066
[OGCA] hot springs metagenome; Conch Spring, Yellowstone National Park, Wyoming, USA
311
238
-
Gln
TTG
[ENA]
¢þ
>W141730227
JNIE01000006
Aquificota
Thermocrinis jamiesonii GBS [JNIE]
3817
3744
-
Gln
TTG
[ENA]
¡û
>C141011677
CP007028
Aquificota
Thermocrinis ruber DSM 23557 [CP007028]
565554
565627
+
Gln
TTG
-
¡û
>C10113062
CP001931
Aquificota
Thermocrinis albus DSM 14484 [CP001931]
205083
205010
-
Gln
TTG
[Ensembl]
¡û
Identical group No.582447 (2 seq.)
>C09108592
CP001230
Aquificota
Persephonella marina EX-H1 [CP001230]
1210450
1210525
+
Gln
TTG
[Ensembl]
¡û
>W1911493113
OBEI01000005
Aquificota
Persephonella hydrogeniphila DSM 15103 [OBEI]
104035
104110
+
Gln
TTG
[ENA]
¡û
Identical group No.614156 (2 seq.)
>W141557073
JHUV01000011
Aquificota
Sulfurihydrogenibium subterraneum DSM 15120 [JHUV]
58890
58965
+
Gln
TTG
[ENA]
¡û
>C09109095
CP001229
Aquificota
Sulfurihydrogenibium azorense Az-Fu1 [CP001229]
191017
191092
+
Gln
TTG
[Ensembl]
¡û
Identical group No.648783 (1 seq.)
>C000030
AE000657
Aquificota
Aquifex aeolicus VF5 [AE000657]
1147837
1147762
-
Gln
TTG
[Ensembl]
¡û
Identical group No.658396 (4 seq.)
>C08010677
CP001080
Aquificota
Sulfurihydrogenibium sp. YO3AOP1 [CP001080]
256319
256393
+
Gln
TTG
[Ensembl]
¡û
>W09107731
ABLS01000031
Aquificota
Sulfurihydrogenibium sp. YO3AOP1 [ABLS]
9162
9236
+
Gln
TTG
[ENA]
¡û
>W09114574
ABZS01000140
Aquificota
Sulfurihydrogenibium yellowstonense SS-5 [ABZS]
1708
1634
-
Gln
TTG
[ENA]
¡û
>ENV09004227
ADKK01000215
Hot springs metagenome ctg_1106445177583
14505
14579
+
Gln
TTG
[ENA]
¡û
Identical group No.674028 (16 seq.)
>W131217748
ATXC01000001
Aquificota
Desulfurobacterium sp. TC5-1 [ATXC]
1406139
1406213
+
Gln
TTG
[ENA]
¡û
>W1711589795
MOEN01000030
Aquificota
Desulfurobacterium indicum K6013 [MOEN]
7612
7686
+
Gln
TTG
[ENA]
¡û
>WENV180275392
OBHT01021070
[OBHT] metagenome; hydrothermal vent
148
74
-
Gln
TTG
[ENA]
¢þ
>WENV180287953
OBIL01020779
[OBIL] metagenome; hydrothermal vent
187
261
+
Gln
TTG
[ENA]
¢þ
>WENV180582176
OCMO01006581
[OCMO] metagenome; diffuse fluid
317
243
-
Gln
TTG
[ENA]
¢þ
>WENV180648136
OCSI01098212
[OCSI] metagenome; diffuse fluid
197
123
-
Gln
TTG
[ENA]
¢þ
>WENV181212850
OFBU01000475
[OFBU] metagenome; hydrothermal vent
2795
2869
+
Gln
TTG
[ENA]
¢þ
>WENV181214147
OFBW01016180
[OFBW] metagenome; hydrothermal vent
173
99
-
Gln
TTG
[ENA]
¢þ
>WENV181214632
OFBY01004339
[OFBY] metagenome; hydrothermal vent
136
62
-
Gln
TTG
[ENA]
¢þ
>WENV181215089
OFBZ01003109
[OFBZ] metagenome; hydrothermal vent
1419
1493
+
Gln
TTG
[ENA]
¢þ
>WENV181215610
OFCA01004535
[OFCA] metagenome; hydrothermal vent
628
554
-
Gln
TTG
[ENA]
¢þ
>WENV181216012
OFCB01001446
[OFCB] metagenome; hydrothermal vent
1260
1186
-
Gln
TTG
[ENA]
¢þ
>WENV181216519
OFCC01001639
[OFCC] metagenome; hydrothermal vent
106
32
-
Gln
TTG
[ENA]
¢þ
>W1910547783
FZOB01000005
Aquificota
Desulfurobacterium atlanticum DSM 15668 [FZOB]
31703
31629
-
Gln
TTG
[ENA]
¡û
>C11107396
CP002543
Aquificota
Desulfurobacterium thermolithotrophum DSM 11699 [CP002543]
1434452
1434526
+
Gln
TTG
[Ensembl]
¡û
>C11122340
CP002444
Aquificota
Thermovibrio ammonificans HB-1 [CP002444]
1596952
1596878
-
Gln
TTG
[Ensembl]
¡û
Identical group No.739520 (1 seq.)
>C161000108
AP013035
Aquificota
Thermosulfidibacter takaii ABI70S6 [AP013035]
509217
509143
-
Gln
TTG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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