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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Bacillota
Anticodon = AAG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.83531 (80 seq.)
>W131241936
BASH01000001
Bacillota
Lentilactobacillus otakiensis JCM 15040 [BASH]
18266
18353
+
Leu
AAG
[ENA]
¡û
>W1711438186
MIQE01000012
Bacillota
Lentilactobacillus sunkii [MIQE]
211897
211810
-
Leu
AAG
[ENA]
¡û
>W141226584
BAKI01000028
Bacillota
Lentilactobacillus farraginis JCM 14108 [BAKI]
15349
15262
-
Leu
AAG
[ENA]
¡û
>W09122558
ACGG01000119
Bacillota
Lentilactobacillus hilgardii subsp. gravesensis ATCC 27305 [ACGG]
59812
59725
-
Leu
AAG
[ENA]
¡û
>W09122617
ACGH01000136
Bacillota
Lentilactobacillus buchneri ATCC 11577 [ACGH]
60680
60593
-
Leu
AAG
[ENA]
¡û
>W09122929
ACGP01000009
Bacillota
Lentilactobacillus hilgardii ATCC 8290 [ACGP]
19530
19617
+
Leu
AAG
[ENA]
¡û
>W1910870888
NCWS01000010
Bacillota
Lactobacillus kefiri OG2 [NCWS]
17983
18070
+
Leu
AAG
[ENA]
¡û
>W1910871477
NCXD01000003
Bacillota
Lactobacillus kefiri KR [NCXD]
60714
60801
+
Leu
AAG
[ENA]
¡û
>W1910872046
NDFJ01000010
Bacillota
Lactobacillus kefiri Olga [NDFJ]
17983
18070
+
Leu
AAG
[ENA]
¡û
>W1911551306
OVSN01000005
Bacillota
Lactobacillus raoultii Marseille-P4006 [OVSN]
9733
9646
-
Leu
AAG
[ENA]
¡û
>W1911632171
PUFP01000034
Bacillota
Lactobacillus buchneri ATCC 4005 [PUFP]
5037
4950
-
Leu
AAG
[ENA]
¡û
>W1911632292
PUFR01000075
Bacillota
Lactobacillus hilgardii ATCC 8290 [PUFR]
21352
21439
+
Leu
AAG
[ENA]
¡û
>W1810586586
QFFL01000001
Bacillota
Lentilactobacillus kefiri SGL 13 [QFFL]
578842
578755
-
Leu
AAG
[ENA]
¡û
>PL201000584
CP043613
Bacillota
Lactobacillus buchneri MGB0786 plasmid:unnamed1 [CP043613]
53152
53239
+
Leu
AAG
[ENA]
¡û
>W2010098149
BJOS01000004
Bacillota
Lactobacillus buchneri subsp. silagei SG162 [BJOS]
165624
165537
-
Leu
AAG
[ENA]
¡û
>W2010098214
BJOT01000005
Bacillota
Lactobacillus buchneri subsp. silagei NK01 [BJOT]
16917
17004
+
Leu
AAG
[ENA]
¡û
>W2010100449
BJVK01000011
Bacillota
Lactobacillus kefiri NBRC 15888 [BJVK]
17942
18029
+
Leu
AAG
[ENA]
¡û
>W2010105844
BJZW01000039
Bacillota
Lactobacillus buchneri NBRC 107764 [BJZW]
21978
22065
+
Leu
AAG
[ENA]
¡û
>W2010106009
BKAB01000008
Bacillota
Lactobacillus diolivorans NBRC 107869 [BKAB]
101762
101675
-
Leu
AAG
[ENA]
¡û
>W2010264452
CABKOL020000102
Bacillota
Lactobacillus hilgardii [CABKOL]
715401
715314
-
Leu
AAG
[ENA]
¡û
>W2010286721
CABMMA010000001
Bacillota
Lactobacillus kefiri [CABMMA]
578842
578755
-
Leu
AAG
[ENA]
¡û
>W2010345366
CADBUC010000031
Bacillota
Lactobacillus buchneri [CADBUC]
21722
21809
+
Leu
AAG
[ENA]
¡û
>W2010939618
NCWS01000010
Bacillota
Lactobacillus kefiri OG2 [NCWS]
17983
18070
+
Leu
AAG
[ENA]
¡û
>W2010940207
NCXD01000003
Bacillota
Lactobacillus kefiri KR [NCXD]
60714
60801
+
Leu
AAG
[ENA]
¡û
>W2010940749
NDFJ01000010
Bacillota
Lactobacillus kefiri Olga [NDFJ]
17983
18070
+
Leu
AAG
[ENA]
¡û
>W2011175260
OVSN01000005
Bacillota
Lactobacillus raoultii Marseille-P4006 [OVSN]
9733
9646
-
Leu
AAG
[ENA]
¡û
>W2011223186
PUFP01000034
Bacillota
Lactobacillus buchneri ATCC 4005 [PUFP]
5037
4950
-
Leu
AAG
[ENA]
¡û
>W2011223307
PUFR01000075
Bacillota
Lactobacillus hilgardii ATCC 8290 [PUFR]
21352
21439
+
Leu
AAG
[ENA]
¡û
>W2011697148
SUMO01000002
Bacillota
Lactobacillus buchneri S59 [SUMO]
380213
380126
-
Leu
AAG
[ENA]
¡û
>W2011697197
SUMP01000002
Bacillota
Lactobacillus buchneri S58 [SUMP]
17873
17960
+
Leu
AAG
[ENA]
¡û
>W2011697251
SUMQ01000002
Bacillota
Lactobacillus buchneri S53 [SUMQ]
17873
17960
+
Leu
AAG
[ENA]
¡û
>W2011697322
SUMR01000039
Bacillota
Lactobacillus buchneri S51 [SUMR]
16677
16764
+
Leu
AAG
[ENA]
¡û
>W2011697360
SUMS01000003
Bacillota
Lactobacillus buchneri S50 [SUMS]
108648
108735
+
Leu
AAG
[ENA]
¡û
>W2011697532
SUMV01000006
Bacillota
Lactobacillus buchneri S47 [SUMV]
17873
17960
+
Leu
AAG
[ENA]
¡û
>W2011697630
SUMX01000001
Bacillota
Lactobacillus buchneri S45 [SUMX]
625878
625791
-
Leu
AAG
[ENA]
¡û
>W2011697733
SUMZ01000007
Bacillota
Lactobacillus buchneri S43 [SUMZ]
17873
17960
+
Leu
AAG
[ENA]
¡û
>W2011697776
SUNA01000002
Bacillota
Lactobacillus buchneri S42 [SUNA]
63158
63245
+
Leu
AAG
[ENA]
¡û
>W2012013384
VFBO01000003
Bacillota
Lactobacillus buchneri ATCC 4005 [VFBO]
1336663
1336576
-
Leu
AAG
[ENA]
¡û
>W2012013392
VFBP01000008
Bacillota
Lactobacillus buchneri LA1184 [VFBP]
19126
19213
+
Leu
AAG
[ENA]
¡û
>W2012013502
VFBQ01000012
Bacillota
Lactobacillus buchneri LA1181 [VFBQ]
1444165
1444078
-
Leu
AAG
[ENA]
¡û
>W2012013561
VFBR01000034
Bacillota
Lactobacillus buchneri LA1175D [VFBR]
1482909
1482822
-
Leu
AAG
[ENA]
¡û
>W2012013617
VFBS01000003
Bacillota
Lactobacillus buchneri LA1167 [VFBS]
1421260
1421173
-
Leu
AAG
[ENA]
¡û
>W2012013674
VFBT01000015
Bacillota
Lactobacillus buchneri LA1161C [VFBT]
1415526
1415439
-
Leu
AAG
[ENA]
¡û
>W2012013729
VFBU01000016
Bacillota
Lactobacillus buchneri LA1161B [VFBU]
1410219
1410132
-
Leu
AAG
[ENA]
¡û
>W2012013784
VFBV01000027
Bacillota
Lactobacillus buchneri LA1147 [VFBV]
1414016
1413929
-
Leu
AAG
[ENA]
¡û
>W2110056723
BNJR01000021
Bacillota
Lactobacillus sp. YK48G [BNJR]
143730
143643
-
Leu
AAG
[ENA]
¡û
>W2110691702
JAIPUM010000008
Bacillota
Lentilactobacillus otakiensis cek-R3 [JAIPUM]
44260
44347
+
Leu
AAG
[ENA]
¡û
>C211317965
CP073066
Bacillota
Lentilactobacillus buchneri ATCC 4005 [CP073066]
266035
265948
-
Leu
AAG
-
¡û
>C231345359
CP094503
Bacillota
Lentilactobacillus kefiri Fanghua [CP094503]
1542083
1541996
-
Leu
AAG
-
¡û
>W2110754631
NSMC01000037
Bacillota
Lentilactobacillus hilgardii TMW 1828 [NSMC]
10946
11033
+
Leu
AAG
[ENA]
¡û
>W2110757193
PPFW01000037
Bacillota
Lentilactobacillus hilgardii TMW12196 [PPFW]
10946
11033
+
Leu
AAG
[ENA]
¡û
>C241033214
CP029971
Bacillota
Lentilactobacillus kefiri DH5 [CP029971]
2386240
2386153
-
Leu
AAG
-
¡û
>C241081476
CP043615
Bacillota
Lentilactobacillus buchneri MGB0786 [CP043615]
2449471
2449384
-
Leu
AAG
-
¡û
>C241086995
CP044119
Bacillota
Lentilactobacillus hilgardii LH500 [CP044119]
1769641
1769554
-
Leu
AAG
-
¡û
>C241116569
CP047121
Bacillota
Lentilactobacillus hilgardii FLUB [CP047121]
2029694
2029607
-
Leu
AAG
-
¡û
>C241142358
CP050262
Bacillota
Lentilactobacillus hilgardii LMG 07934 [CP050262]
1811798
1811711
-
Leu
AAG
-
¡û
>C11112257
CP002652
Bacillota
Lentilactobacillus buchneri NRRL B-30929 [CP002652]
1531793
1531706
-
Leu
AAG
[Ensembl]
¡û
>W121016913
AGRJ01000245
Bacillota
Lentilactobacillus kisonensis F0435 [AGRJ]
1787
1700
-
Leu
AAG
[ENA]
¡û
>W1610031460
AYYV01000079
Bacillota
Lentilactobacillus kefiri DSM 20587 = JCM 5818 [AYYV]
18167
18254
+
Leu
AAG
[ENA]
¡û
>W1610033794
AZDF01000014
Bacillota
Lentilactobacillus hilgardii DSM 20176 = ATCC 8290 [AZDF]
27015
26928
-
Leu
AAG
[ENA]
¡û
>W1610034122
AZDM01000041
Bacillota
Lentilactobacillus buchneri DSM 20057 [AZDM]
3601
3514
-
Leu
AAG
[ENA]
¡û
>W1610034809
AZEA01000001
Bacillota
Lentilactobacillus sunkii DSM 19904 [AZEA]
342688
342601
-
Leu
AAG
[ENA]
¡û
>W1610034869
AZEB01000011
Bacillota
Lentilactobacillus kisonensis DSM 19906 = JCM 15041 [AZEB]
51316
51229
-
Leu
AAG
[ENA]
¡û
>W1610034973
AZED01000014
Bacillota
Lentilactobacillus otakiensis DSM 19908 = JCM 15040 [AZED]
622585
622498
-
Leu
AAG
[ENA]
¡û
>W1610035996
AZEY01000090
Bacillota
Lentilactobacillus diolivorans DSM 14421 [AZEY]
22057
22144
+
Leu
AAG
[ENA]
¡û
>W1610037300
AZFY01000032
Bacillota
Lentilactobacillus farraginis DSM 18382 = JCM 14108 [AZFY]
36614
36701
+
Leu
AAG
[ENA]
¡û
>W1610044697
BBAT01000001
Bacillota
Lentilactobacillus otakiensis DSM 19908 = JCM 15040 [BBAT]
62576
62663
+
Leu
AAG
[ENA]
¡û
>W1610044770
BBAU01000019
Bacillota
Lentilactobacillus kisonensis DSM 19906 = JCM 15041 [BBAU]
21032
20945
-
Leu
AAG
[ENA]
¡û
>W1610045778
BBBV01000012
Bacillota
Lentilactobacillus kefiri DSM 20587 = JCM 5818 [BBBV]
17914
18001
+
Leu
AAG
[ENA]
¡û
>C131001732
CP003043
Bacillota
Lentilactobacillus buchneri subsp. silagei CD034 [CP003043]
1529922
1529835
-
Leu
AAG
[Ensembl]
¡û
>W1710028387
AYYV01000079
Bacillota
Lentilactobacillus kefiri DSM 20587 = JCM 5818 [AYYV]
18167
18254
+
Leu
AAG
[ENA]
¡û
>W1710031249
AZDM01000041
Bacillota
Lentilactobacillus buchneri DSM 20057 [AZDM]
3601
3514
-
Leu
AAG
[ENA]
¡û
>W1710031936
AZEA01000001
Bacillota
Lentilactobacillus sunkii DSM 19904 [AZEA]
342688
342601
-
Leu
AAG
[ENA]
¡û
>W1710031996
AZEB01000011
Bacillota
Lentilactobacillus kisonensis DSM 19906 = JCM 15041 [AZEB]
51316
51229
-
Leu
AAG
[ENA]
¡û
>W1710032100
AZED01000014
Bacillota
Lentilactobacillus otakiensis DSM 19908 = JCM 15040 [AZED]
622585
622498
-
Leu
AAG
[ENA]
¡û
>W1710033035
AZEY01000090
Bacillota
Lentilactobacillus diolivorans DSM 14421 [AZEY]
22057
22144
+
Leu
AAG
[ENA]
¡û
>W1710034339
AZFY01000032
Bacillota
Lentilactobacillus farraginis DSM 18382 = JCM 14108 [AZFY]
36614
36701
+
Leu
AAG
[ENA]
¡û
>W1710041795
BBAT01000001
Bacillota
Lentilactobacillus otakiensis DSM 19908 = JCM 15040 [BBAT]
62576
62663
+
Leu
AAG
[ENA]
¡û
>W1710041868
BBAU01000019
Bacillota
Lentilactobacillus kisonensis DSM 19906 = JCM 15041 [BBAU]
21032
20945
-
Leu
AAG
[ENA]
¡û
>W1710042619
BBBV01000012
Bacillota
Lentilactobacillus kefiri DSM 20587 = JCM 5818 [BBBV]
17914
18001
+
Leu
AAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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