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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Bacillota
Anticodon = CAG
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.128967 (19 seq.)
>W1810608863
QGTQ01000005
Bacillota
Paenibacillus cellulosilyticus CECT 5696 [QGTQ]
1190
1276
+
Leu
CAG
[ENA]
¡û
>W1810608916
QGTQ01000036
Bacillota
Paenibacillus cellulosilyticus CECT 5696 [QGTQ]
1421
1507
+
Leu
CAG
[ENA]
¡û
>W1810608922
QGTQ01000039
Bacillota
Paenibacillus cellulosilyticus CECT 5696 [QGTQ]
27223
27137
-
Leu
CAG
[ENA]
¡û
>W1810608923
QGTQ01000039
Bacillota
Paenibacillus cellulosilyticus CECT 5696 [QGTQ]
25536
25450
-
Leu
CAG
[ENA]
¡û
>PL201001133
CP054613
Bacillota
Paenibacillus cellulosilyticus KACC 14175 plasmid:unnamed4 [CP054613]
2548358
2548444
+
Leu
CAG
[ENA]
¡û
>W2010144918
BLWM01000023
Bacillota
Paenibacillus curdlanolyticus B-6 [BLWM]
93153
93067
-
Leu
CAG
[ENA]
¡û
>W2010144954
BLWM01000037
Bacillota
Paenibacillus curdlanolyticus B-6 [BLWM]
25552
25638
+
Leu
CAG
[ENA]
¡û
>W2010144955
BLWM01000037
Bacillota
Paenibacillus curdlanolyticus B-6 [BLWM]
26057
26143
+
Leu
CAG
[ENA]
¡û
>W2010144957
BLWM01000037
Bacillota
Paenibacillus curdlanolyticus B-6 [BLWM]
54447
54361
-
Leu
CAG
[ENA]
¡û
>W2010144984
BLWM01000048
Bacillota
Paenibacillus curdlanolyticus B-6 [BLWM]
2629
2543
-
Leu
CAG
[ENA]
¡û
>W2010716524
JACHXK010000010
Bacillota
Paenibacillus phyllosphaerae CECT 5862 [JACHXK]
439
525
+
Leu
CAG
[ENA]
¡û
>W2010716559
JACHXK010000036
Bacillota
Paenibacillus phyllosphaerae CECT 5862 [JACHXK]
547
633
+
Leu
CAG
[ENA]
¡û
>W2010716567
JACHXK010000036
Bacillota
Paenibacillus phyllosphaerae CECT 5862 [JACHXK]
2678
2764
+
Leu
CAG
[ENA]
¡û
>C211380345
CP080545
Bacillota
Paenibacillus sp. sptzw28 [CP080545]
2703069
2703155
+
Leu
CAG
-
¡û
>W10126324
AEDD01000009
Bacillota
Paenibacillus curdlanolyticus YK9 [AEDD]
286481
286567
+
Leu
CAG
[ENA]
¡û
>C241167740
CP054612
Bacillota
Paenibacillus cellulosilyticus KACC 14175 [CP054612]
999892
999978
+
Leu
CAG
-
¡û
>C241167756
CP054612
Bacillota
Paenibacillus cellulosilyticus KACC 14175 [CP054612]
2407880
2407794
-
Leu
CAG
-
¡û
>C241167757
CP054612
Bacillota
Paenibacillus cellulosilyticus KACC 14175 [CP054612]
2406193
2406107
-
Leu
CAG
-
¡û
>W11133585
AEDD01000009
Bacillota
Paenibacillus curdlanolyticus YK9 [AEDD]
286481
286567
+
Leu
CAG
[ENA]
¡û
Identical group No.128968 (4 seq.)
>W1810608895
QGTQ01000024
Bacillota
Paenibacillus cellulosilyticus CECT 5696 [QGTQ]
100917
100831
-
Leu
CAG
[ENA]
¡û
>PL201001169
CP054613
Bacillota
Paenibacillus cellulosilyticus KACC 14175 plasmid:unnamed4 [CP054613]
1552833
1552747
-
Leu
CAG
[ENA]
¡û
>W2110285590
JACXZA010000009
Bacillota
Paenibacillus sp. PR3 [JACXZA]
201997
201911
-
Leu
CAG
[ENA]
¡û
>W2110285601
JACXZA010000010
Bacillota
Paenibacillus sp. PR3 [JACXZA]
141730
141644
-
Leu
CAG
[ENA]
¡û
Identical group No.149801 (1 seq.)
>PL201000874
CP051163
Bacillota
Geobacillus subterraneus CPW16 plasmid:pBsrF12 [CP051163]
7016
6931
-
Leu
CAG
[ENA]
¡û
Identical group No.149802 (3 seq.)
>PL201001351
CP059498
Bacillota
Bacillus velezensis JSRB 08 plasmid:unnamed1 [CP059498]
2836
2751
-
Leu
CAG
[ENA]
¡û
>C241178012
CP059497
Bacillota
Bacillus velezensis JSRB 08 [CP059497]
3106616
3106531
-
Leu
CAG
-
¡û
>C241284853
CP128551
Bacillota
Bacillus velezensis SRCM123441 [CP128551]
3106879
3106794
-
Leu
CAG
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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