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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Bacillota
Anticodon = CAT
HIT:
7 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.324540 (14 seq.)
>W1711144111
LVHY01000047
Bacillota
Aeribacillus pallidus 8 [LVHY]
38859
38932
+
Met
CAT
[ENA]
¡û
>W1711172033
LWBR01000024
Bacillota
Aeribacillus pallidus [LWBR]
162151
162224
+
Met
CAT
[ENA]
¡û
>C181027442
CP017703
Bacillota
Aeribacillus pallidus KCTC3564 [CP017703]
3764759
3764686
-
Met
CAT
-
¡û
>W1810694767
QLMH01000002
Bacillota
Anoxybacillus vitaminiphilus CGMCC 1.8979 [QLMH]
360587
360511
-
Met
CAT
[ENA]
¡û
>W1810888825
QURG01000001
Bacillota
Aeribacillus pallidus W-12 [QURG]
162273
162200
-
Met
CAT
[ENA]
¡û
>PL201000639
CP045273
Bacillota
Bacillus megaterium FDU301 plasmid:pFDU301A [CP045273]
168061
168137
+
Ile2
CAT
[ENA]
¡û
>W2010515659
JAAMPM010000034
Bacillota
Bacillus megaterium IN_430 [JAAMPM]
320539
320615
+
Ile2
CAT
[ENA]
¡û
>W2010680449
JACDUU010000001
Bacillota
Anoxybacillus calidus DSM 25220 [JACDUU]
128042
128118
+
Ile2
CAT
[ENA]
¡û
>W2011559590
SFCD01000004
Bacillota
Aeribacillus pallidus TD1 [SFCD]
27476
27549
+
Ile2
CAT
[ENA]
¡û
>W2012042975
VISS01000002
Bacillota
Aeribacillus composti KCTC 33824 [VISS]
107421
107494
+
Ile2
CAT
[ENA]
¡û
>C201015320
AP022323
Bacillota
Aeribacillus pallidus PI8 [AP022323]
2589559
2589486
-
Ile2
CAT
-
¡û
>W1511523340
JYCE01000168
Bacillota
Bacillus alveayuensis 24KAM51 [JYCE]
39903
39976
+
Met
CAT
[ENA]
¡û
>W1610955119
LVHY01000047
Bacillota
Aeribacillus pallidus 8 [LVHY]
38859
38932
+
Met
CAT
[ENA]
¡û
>W1610980638
LWBR01000024
Bacillota
Aeribacillus pallidus [LWBR]
162151
162224
+
Met
CAT
[ENA]
¡û
Identical group No.336105 (4 seq.)
>W1911351005
NUWZ01000010
Bacillota
Bacillus megaterium AFS081669 [NUWZ]
150386
150310
-
Met
CAT
[ENA]
¡û
>PL201000638
CP045273
Bacillota
Bacillus megaterium FDU301 plasmid:pFDU301A [CP045273]
167434
167510
+
Ile2
CAT
[ENA]
¡û
>W2010515658
JAAMPM010000034
Bacillota
Bacillus megaterium IN_430 [JAAMPM]
319915
319991
+
Ile2
CAT
[ENA]
¡û
>W2011110842
NUWZ01000010
Bacillota
Bacillus megaterium AFS081669 [NUWZ]
150386
150310
-
Ile2
CAT
[ENA]
¡û
Identical group No.336108 (1 seq.)
>PL201000746
CP048288
Bacillota
Paenibacillus sp. 14171R-81 plasmid:unnamed2 [CP048288]
93743
93667
-
Met
CAT
[ENA]
¡û
Identical group No.343579 (15 seq.)
>W1711373135
MDUA01000001
Bacillota
Levilactobacillus brevis [MDUA]
1807591
1807666
+
Met
CAT
[ENA]
¡û
>W1711373156
MDUA01000001
Bacillota
Levilactobacillus brevis [MDUA]
2392230
2392155
-
Met
CAT
[ENA]
¡û
>W1711373188
MDUA01000002
Bacillota
Levilactobacillus brevis [MDUA]
219600
219675
+
Met
CAT
[ENA]
¡û
>C171051215
CP016797
Bacillota
Levilactobacillus brevis TMW 1.2112 [CP016797]
888440
888515
+
Met
CAT
-
¡û
>C171099272
CP019750
Bacillota
Levilactobacillus brevis TMW 1.2113 [CP019750]
886309
886384
+
Met
CAT
-
¡û
>C171099273
CP019750
Bacillota
Levilactobacillus brevis TMW 1.2113 [CP019750]
937942
938017
+
Met
CAT
-
¡û
>W141146277
AWVK01000029
Bacillota
Levilactobacillus brevis ATCC 14869 = DSM 20054 [AWVK]
9960
9885
-
Met
CAT
[ENA]
¡û
>C181211347
LS483405
Bacillota
Levilactobacillus brevis NCTC13768 [LS483405]
1608494
1608419
-
Met
CAT
-
¡û
>W1910181305
BJLW01000001
Bacillota
Lactobacillus brevis NBRC 3960 [BJLW]
32097
32022
-
Met
CAT
[ENA]
¡û
>PL201001357
CP059605
Bacillota
Lactobacillus suantsaii CBA3634 plasmid:pCBA3634-02 [CP059605]
35051
35124
+
Ile2
CAT
[ENA]
¡û
>W2010094991
BJLW01000001
Bacillota
Lactobacillus brevis NBRC 3960 [BJLW]
32097
32022
-
Ile2
CAT
[ENA]
¡û
>W2010578828
JAAXLK010000020
Bacillota
Lactobacillus sp. ZJLC3-7 [JAAXLK]
10769
10844
+
Ile2
CAT
[ENA]
¡û
>W2011241503
QFDL01000002
Bacillota
Lactobacillus brevis TR052 [QFDL]
201816
201741
-
Ile2
CAT
[ENA]
¡û
>C231546114
CP113117
Bacillota
Levilactobacillus brevis SMB091 [CP113117]
526338
526265
-
Ile2
CAT
-
¡û
>W1610032969
AZCP01000001
Bacillota
Levilactobacillus brevis ATCC 14869 = DSM 20054 [AZCP]
16823
16898
+
Met
CAT
[ENA]
¡û
Identical group No.403865 (2 seq.)
>W1911303271
NTWR01000076
Bacillota
Bacillus cereus AFS009278 [NTWR]
14418
14344
-
Met
CAT
[ENA]
¡û
>PL201000679
CP045607
Bacillota
Bacillus cereus SB1 plasmid:p1 [CP045607]
568544
568618
+
Ile2
CAT
[ENA]
¡û
Identical group No.449332 (3 seq.)
>W1711116763
LUCO01000010
Bacillota
Priestia megaterium [LUCO]
41050
40974
-
Met
CAT
[ENA]
¡û
>PL201000761
CP048886
Bacillota
Bacillus megaterium Mes11 plasmid:pBMG3 [CP048886]
113493
113420
-
Ile2
CAT
[ENA]
¡û
>W1610928122
LUCO01000010
Bacillota
Priestia megaterium [LUCO]
41050
40974
-
Met
CAT
[ENA]
¡û
Identical group No.484012 (1 seq.)
>PL201000317
CP031070
Bacillota
Bacillus sp. JAS24-2 plasmid:pl278 [CP031070]
257475
257550
+
Ile2
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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