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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Bacillota
Anticodon = CCT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.308943 (80 seq.)
>W1710872237
LMLV01000007
Bacillota
Paenibacillus sp. Leaf72 [LMLV]
60613
60689
+
Arg
CCT
[ENA]
¡û
>W1711252497
LYPA01000071
Bacillota
Paenibacillus oryzae [LYPA]
243401
243477
+
Arg
CCT
[ENA]
¡û
>W1711418071
MHHN01000231
Bacillota
Paenibacillus sp. RIFOXYA1_FULL_44_5 [MHHN]
1334
1258
-
Arg
CCT
[ENA]
¡û
>W1711904521
MZNT01000017
Bacillota
Paenibacillus sp. 32352 [MZNT]
8803
8879
+
Arg
CCT
[ENA]
¡û
>W131235795
AULV01000020
Bacillota
Paenibacillus harenae DSM 16969 [AULV]
80362
80438
+
Arg
CCT
[ENA]
¡û
>W141251986
CBRA020000034
Bacillota
Paenibacillus sp. P22 [CBRA]
3292
3216
-
Arg
CCT
[ENA]
¡û
>WENV183729710
PJTR01000027
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
224235
224311
+
Arg
CCT
[ENA]
¡û
>WENV183734873
PJUA01000072
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
38847
38771
-
Arg
CCT
[ENA]
¡û
>C181021391
CP016808
Bacillota
Paenibacillus sp. BIHB 4019 [CP016808]
1931652
1931728
+
Arg
CCT
-
¡û
>C191007110
AP019308
Bacillota
Paenibacillus baekrokdamisoli KCTC 33723 [AP019308]
5232841
5232917
+
Arg
CCT
-
¡û
>C191125253
CP034437
Bacillota
Paenibacillus albus 18JY67-1 [CP034437]
893874
893798
-
Arg
CCT
-
¡û
>C191143865
CP035492
Bacillota
Paenibacillus protaetiae FW100M-2 [CP035492]
3088297
3088373
+
Arg
CCT
-
¡û
>W141702812
JMLS01000022
Bacillota
Paenibacillus sp. UNC451MF [JMLS]
8526
8602
+
Arg
CCT
[ENA]
¡û
>W1910154734
BILZ01000077
Bacillota
Paenibacillus kobensis NBRC 15729 [BILZ]
3966
4042
+
Arg
CCT
[ENA]
¡û
>W1910154907
BIMD01000019
Bacillota
Paenibacillus humicus NBRC 102415 [BIMD]
70699
70775
+
Arg
CCT
[ENA]
¡û
>W1910831966
MYFO01000008
Bacillota
Paenibacillus sp. MEC069 [MYFO]
14792
14718
-
Arg
CCT
[ENA]
¡û
>W1910913924
NHRJ02000017
Bacillota
Bacillus xerothermodurans ATCC 27380 [NHRJ]
72135
72059
-
Arg
CCT
[ENA]
¡û
>W1911075520
NMUQ01000002
Bacillota
Paenibacillus herberti R33 [NMUQ]
1018444
1018368
-
Arg
CCT
[ENA]
¡û
>W1911771086
QXJM01000040
Bacillota
Cohnella sp. K2E09-144 [QXJM]
363230
363306
+
Arg
CCT
[ENA]
¡û
>W1810608879
QGTQ01000021
Bacillota
Paenibacillus cellulosilyticus CECT 5696 [QGTQ]
32805
32881
+
Arg
CCT
[ENA]
¡û
>W1810697216
QLUW01000007
Bacillota
Paenibacillus montanisoli RA17 [QLUW]
15088
15012
-
Arg
CCT
[ENA]
¡û
>W1810860937
QTTN01000016
Bacillota
Paenibacillus taihuensis CGMCC 1.10966 [QTTN]
19303
19227
-
Arg
CCT
[ENA]
¡û
>PL201001137
CP054613
Bacillota
Paenibacillus cellulosilyticus KACC 14175 plasmid:unnamed4 [CP054613]
2509769
2509693
-
Arg
CCT
[ENA]
¡û
>C151075927
CP011058
Bacillota
Paenibacillus beijingensis DSM 24997 [CP011058]
2386766
2386690
-
Arg
CCT
[Ensembl]
¡û
>W2010087669
BILZ01000077
Bacillota
Paenibacillus kobensis NBRC 15729 [BILZ]
3966
4042
+
Arg
CCT
[ENA]
¡û
>W2010087842
BIMD01000019
Bacillota
Paenibacillus humicus NBRC 102415 [BIMD]
70699
70775
+
Arg
CCT
[ENA]
¡û
>W2010437658
JAAAMU010000011
Bacillota
Paenibacillus sacheonensis DSM 23054 [JAAAMU]
204744
204820
+
Arg
CCT
[ENA]
¡û
>W2010437750
JAAAMV010000025
Bacillota
Paenibacillus sp. T1 [JAAAMV]
208016
208092
+
Arg
CCT
[ENA]
¡û
>W2010716048
JACHXC010000027
Bacillota
Paenibacillus baekrokdamisoli CECT 8890 [JACHXC]
10695
10619
-
Arg
CCT
[ENA]
¡û
>W2010743566
JACJVP010000007
Bacillota
Cohnella nanjingensis DSM 28246 [JACJVP]
120251
120175
-
Arg
CCT
[ENA]
¡û
>W2010743637
JACJVQ010000003
Bacillota
Cohnella thailandensis DSM 25241 [JACJVQ]
339317
339241
-
Arg
CCT
[ENA]
¡û
>W2010743687
JACJVR010000020
Bacillota
Cohnella xylanilytica DSM 25239 [JACJVR]
42338
42262
-
Arg
CCT
[ENA]
¡û
>W2010922086
MYFO01000008
Bacillota
Paenibacillus sp. MEC069 [MYFO]
14792
14718
-
Arg
CCT
[ENA]
¡û
>W2010966945
NHRJ02000017
Bacillota
Bacillus xerothermodurans ATCC 27380 [NHRJ]
72135
72059
-
Arg
CCT
[ENA]
¡û
>W2011004714
NMUQ01000002
Bacillota
Paenibacillus herberti R33 [NMUQ]
1018444
1018368
-
Arg
CCT
[ENA]
¡û
>W2011328386
QXJM01000040
Bacillota
Cohnella sp. K2E09-144 [QXJM]
363230
363306
+
Arg
CCT
[ENA]
¡û
>W2011393223
RCCY01000017
Bacillota
Paenibacillus sp. RU15A [RCCY]
135285
135361
+
Arg
CCT
[ENA]
¡û
>W2011512304
RZJR01000005
Bacillota
Cohnella sp. AR92 [RZJR]
321734
321658
-
Arg
CCT
[ENA]
¡û
>W2011599691
SIRE01000022
Bacillota
Paenibacillus sp. N2SHLJ1 [SIRE]
1315
1239
-
Arg
CCT
[ENA]
¡û
>W2011625730
SLZD01000011
Bacillota
Paenibacillus sp. BK736 [SLZD]
156482
156558
+
Arg
CCT
[ENA]
¡û
>W2011698183
SUPK01000011
Bacillota
Cohnella sp. CAU 1483 [SUPK]
15095
15019
-
Arg
CCT
[ENA]
¡û
>W2012408383
WOVL01000026
Bacillota
Paenibacillus sp. NEAU-GSW1 [WOVL]
50775
50851
+
Arg
CCT
[ENA]
¡û
>W2012432372
WSTC01000037
Bacillota
Paenibacillus sp. MMS18-CY102 [WSTC]
26483
26407
-
Arg
CCT
[ENA]
¡û
>W2110025439
BMHP01000008
Bacillota
Paenibacillus nasutitermitis CGMCC 1.15178 [BMHP]
184154
184230
+
Arg
CCT
[ENA]
¡û
>W2110067921
BOSI01000006
Bacillota
Paenibacillus sp. J31TS4 [BOSI]
15117
15041
-
Arg
CCT
[ENA]
¡û
>W2110283952
JACXIY010000033
Bacillota
Paenibacillus sp. IB182493 [JACXIY]
81065
81141
+
Arg
CCT
[ENA]
¡û
>W2110285570
JACXZA010000007
Bacillota
Paenibacillus sp. PR3 [JACXZA]
337494
337570
+
Arg
CCT
[ENA]
¡û
>W2110300491
JADBDR010000031
Bacillota
Paenibacillus sp. OAS669 [JADBDR]
8499
8575
+
Arg
CCT
[ENA]
¡û
>W2110460182
JAFBDP010000011
Bacillota
Paenibacillus sacheonensis DSM 23054 [JAFBDP]
10913
10837
-
Arg
CCT
[ENA]
¡û
>W2110537254
JAGGDJ010000016
Bacillota
Paenibacillus sp. MWE-103 [JAGGDJ]
15592
15516
-
Arg
CCT
[ENA]
¡û
>W2110539260
JAGGKW010000008
Bacillota
Cohnella thailandensis DSM 25241 [JAGGKW]
36968
37044
+
Arg
CCT
[ENA]
¡û
>W2110560882
JAGKSP010000037
Bacillota
Paenibacillus sp. DLE-14 [JAGKSP]
20011
20087
+
Arg
CCT
[ENA]
¡û
>W2110664139
JAHZIK010000051
Bacillota
Paenibacillus sepulcri CCM 7311 [JAHZIK]
7878
7954
+
Arg
CCT
[ENA]
¡û
>C201212545
CP048209
Bacillota
Paenibacillus sp. 12200R-189 [CP048209]
281160
281084
-
Arg
CCT
-
¡û
>C201213173
CP048286
Bacillota
Paenibacillus sp. 14171R-81 [CP048286]
3510723
3510799
+
Arg
CCT
-
¡û
>C211375285
CP080269
Bacillota
R14(2021) [CP080269]
4126118
4126042
-
Arg
CCT
-
¡û
>C211380314
CP080545
Bacillota
Paenibacillus sp. sptzw28 [CP080545]
163691
163767
+
Arg
CCT
-
¡û
>C231039391
CP031168
Bacillota
Paenibacillus sp. H1-7 [CP031168]
8350901
8350825
-
Arg
CCT
-
¡û
>C231298506
CP091430
Bacillota
Paenibacillus sp. PHS-Z3 [CP091430]
110582
110506
-
Arg
CCT
-
¡û
>C231566726
CP115484
Bacillota
Paenibacillus sp. SYP-B4298 [CP115484]
5362896
5362820
-
Arg
CCT
-
¡û
>C241024627
CP022655
Bacillota
Paenibacillus sp. RUD330 [CP022655]
135566
135490
-
Arg
CCT
-
¡û
>W10126284
AEDD01000005
Bacillota
Paenibacillus curdlanolyticus YK9 [AEDD]
75101
75177
+
Arg
CCT
[ENA]
¡û
>C241306489
CP133017
Bacillota
Paenibacillus silvisoli TW38 [CP133017]
107012
106936
-
Arg
CCT
-
¡û
>W11133545
AEDD01000005
Bacillota
Paenibacillus curdlanolyticus YK9 [AEDD]
75101
75177
+
Arg
CCT
[ENA]
¡û
>W1511541264
JZEJ01000001
Bacillota
Paenibacillus sp. D9 [JZEJ]
3865430
3865354
-
Arg
CCT
[ENA]
¡û
>W1511541265
JZEJ01000001
Bacillota
Paenibacillus sp. D9 [JZEJ]
3859030
3858954
-
Arg
CCT
[ENA]
¡û
>W1511577206
LAQO01000032
Bacillota
Paenibacillus algorifonticola XJ259 [LAQO]
96390
96466
+
Arg
CCT
[ENA]
¡û
>W1610049671
BBFE01000054
Bacillota
Paenibacillus sp. JCM 18996 [BBFE]
18470
18394
-
Arg
CCT
[ENA]
¡û
>W1610112146
CZJQ01001449
Campylobacterota
Campylobacter jejuni [CZJQ]
4343
4419
+
Arg
CCT
[ENA]
¡û
>W1610734583
LMLV01000007
Bacillota
Paenibacillus sp. Leaf72 [LMLV]
60613
60689
+
Arg
CCT
[ENA]
¡û
>W1611017285
LYPA01000071
Bacillota
Paenibacillus oryzae [LYPA]
243401
243477
+
Arg
CCT
[ENA]
¡û
>W1710046070
BBFE01000054
Bacillota
Paenibacillus sp. JCM 18996 [BBFE]
18470
18394
-
Arg
CCT
[ENA]
¡û
>W1710114850
CZJQ01001449
Campylobacterota
Campylobacter jejuni [CZJQ]
4343
4419
+
Arg
CCT
[ENA]
¡û
>W1710529255
FNNV01000016
Bacillota
Paenibacillus sp. CF384 [FNNV]
22242
22166
-
Arg
CCT
[ENA]
¡û
>W1710546717
FOCJ01000011
Bacillota
Paenibacillus sp. OV219 [FOCJ]
14238
14162
-
Arg
CCT
[ENA]
¡û
>W1710560636
FONN01000020
Bacillota
Paenibacillus algorifonticola [FONN]
3545
3469
-
Arg
CCT
[ENA]
¡û
>W1710565377
FORE01000018
Bacillota
Paenibacillus sp. UNC496MF [FORE]
174148
174224
+
Arg
CCT
[ENA]
¡û
>W1710576649
FPAD01000006
Bacillota
Paenibacillus sp. BC26 [FPAD]
220519
220595
+
Arg
CCT
[ENA]
¡û
>W1710595455
FTLY01000008
Bacillota
Paenibacillus sp. RU4X [FTLY]
135285
135361
+
Arg
CCT
[ENA]
¡û
>W1710597353
FTND01000008
Bacillota
Paenibacillus sp. RU4T [FTND]
135337
135413
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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