This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Bacillota
Anticodon = CGA
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.35819 (47 seq.)
>W1710872239
LMLV01000012
Bacillota
Paenibacillus sp. Leaf72 [LMLV]
28463
28553
+
Ser
CGA
[ENA]
¡û
>W1710879693
LMRV01000057
Bacillota
Paenibacillus sp. Soil522 [LMRV]
26098
26188
+
Ser
CGA
[ENA]
¡û
>W1711827016
MXQD01000078
Bacillota
Paenibacillus sp. MY03 [MXQD]
24980
25070
+
Ser
CGA
[ENA]
¡û
>W131235782
AULV01000014
Bacillota
Paenibacillus harenae DSM 16969 [AULV]
244670
244580
-
Ser
CGA
[ENA]
¡û
>W141072983
ASQQ01000139
Bacillota
Paenibacillus durus ATCC 35681 [ASQQ]
29927
30017
+
Ser
CGA
[ENA]
¡û
>W141073419
ASSD01000425
Bacillota
Paenibacillus zanthoxyli JH29 [ASSD]
1512
1422
-
Ser
CGA
[ENA]
¡û
>W141255908
CBVJ010000129
Bacillota
Paenibacillus gorillae G1 [CBVJ]
109671
109581
-
Ser
CGA
[ENA]
¡û
>C181021392
CP016808
Bacillota
Paenibacillus sp. BIHB 4019 [CP016808]
2147536
2147626
+
Ser
CGA
-
¡û
>W1910018474
BDQX01000278
Bacillota
Paenibacillus agaridevorans T-3040 [BDQX]
475
565
+
Ser
CGA
[ENA]
¡û
>W1910154711
BILZ01000003
Bacillota
Paenibacillus kobensis NBRC 15729 [BILZ]
219597
219507
-
Ser
CGA
[ENA]
¡û
>W1910940561
NJAR01000014
Bacillota
Paenibacillus castaneae DSM 19417 [NJAR]
430929
430839
-
Ser
CGA
[ENA]
¡û
>W1911779776
QXQB01000011
Bacillota
Paenibacillus pinisoli JCM 19203 [QXQB]
27000
27090
+
Ser
CGA
[ENA]
¡û
>W1911810935
QZCF01000013
Bacillota
Paenibacillus sp. 1011MAR3C5 [QZCF]
60533
60443
-
Ser
CGA
[ENA]
¡û
>W1810608850
QGTQ01000001
Bacillota
Paenibacillus cellulosilyticus CECT 5696 [QGTQ]
628285
628195
-
Ser
CGA
[ENA]
¡û
>W1810759078
QPJD01000014
Bacillota
Paenibacillus prosopidis CECT 7506 [QPJD]
25737
25827
+
Ser
CGA
[ENA]
¡û
>W1810870245
QUBQ01000004
Bacillota
Paenibacillus paeoniae M4BSY-1 [QUBQ]
419850
419760
-
Ser
CGA
[ENA]
¡û
>PL201001138
CP054613
Bacillota
Paenibacillus cellulosilyticus KACC 14175 plasmid:unnamed4 [CP054613]
2297230
2297140
-
Ser
CGA
[ENA]
¡û
>C151005580
CP004078
Bacillota
Paenibacillus sabinae T27 [CP004078]
5252260
5252170
-
Ser
CGA
[Ensembl]
¡û
>C151048238
CP009288
Bacillota
Paenibacillus durus DSM 1735 [CP009288]
6019957
6019867
-
Ser
CGA
[Ensembl]
¡û
>C151077289
CP011114
Bacillota
Paenibacillus durus ATCC 35681 [CP011114]
4736563
4736473
-
Ser
CGA
[Ensembl]
¡û
>W2010078370
BDQX01000278
Bacillota
Paenibacillus agaridevorans T-3040 [BDQX]
475
565
+
Ser
CGA
[ENA]
¡û
>W2010087646
BILZ01000003
Bacillota
Paenibacillus kobensis NBRC 15729 [BILZ]
219597
219507
-
Ser
CGA
[ENA]
¡û
>W2010493310
JAAKGU010000002
Bacillota
Paenibacillus sp. 7124 [JAAKGU]
30319
30409
+
Ser
CGA
[ENA]
¡û
>W2010561726
JAASRW010000009
Bacillota
Paenibacillus lupini CECT 8235 [JAASRW]
25074
25164
+
Ser
CGA
[ENA]
¡û
>W2010561818
JAASRX010000012
Bacillota
Paenibacillus castaneae CECT 7279 [JAASRX]
209033
208943
-
Ser
CGA
[ENA]
¡û
>W2010566474
JAATHD010000027
Bacillota
Paenibacillus sp. HB172176 [JAATHD]
46346
46436
+
Ser
CGA
[ENA]
¡û
>W2010570563
JAAUHL010000019
Bacillota
Paenibacillus sp. 7028 [JAAUHL]
42353
42263
-
Ser
CGA
[ENA]
¡û
>W2010983535
NJAR01000014
Bacillota
Paenibacillus castaneae DSM 19417 [NJAR]
430929
430839
-
Ser
CGA
[ENA]
¡û
>W2011329675
QXQB01000011
Bacillota
Paenibacillus pinisoli JCM 19203 [QXQB]
27000
27090
+
Ser
CGA
[ENA]
¡û
>W2011345593
QZCF01000013
Bacillota
Paenibacillus sp. 1011MAR3C5 [QZCF]
60533
60443
-
Ser
CGA
[ENA]
¡û
>W2011413807
REGQ01000003
Bacillota
Paenibacillaceae bacterium CAVE-418 [REGQ]
287255
287165
-
Ser
CGA
[ENA]
¡û
>W2011479183
RQPI01000017
Bacillota
Paenibacillus sp. 7197 [RQPI]
74302
74212
-
Ser
CGA
[ENA]
¡û
>W2011479184
RQPI01000017
Bacillota
Paenibacillus sp. 7197 [RQPI]
70526
70436
-
Ser
CGA
[ENA]
¡û
>W2011694641
STGF01000042
Bacillota
Paenibacillus sp. SY21-1 [STGF]
3788
3699
-
Ser
CGA
[ENA]
¡û
>W2012408396
WOVL01000034
Bacillota
Paenibacillus sp. NEAU-GSW1 [WOVL]
29661
29751
+
Ser
CGA
[ENA]
¡û
>W2110025888
BMHY01000005
Bacillota
Paenibacillus radicis CGMCC 1.15286 [BMHY]
35677
35767
+
Ser
CGA
[ENA]
¡û
>W2110283966
JACXIY010000036
Bacillota
Paenibacillus sp. IB182493 [JACXIY]
13368
13458
+
Ser
CGA
[ENA]
¡û
>W2110285568
JACXZA010000004
Bacillota
Paenibacillus sp. PR3 [JACXZA]
26656
26746
+
Ser
CGA
[ENA]
¡û
>C201022886
AP023239
Bacillota
Paenibacillus sp. URB8-2 [AP023239]
5569479
5569389
-
Ser
CGA
-
¡û
>C201022887
AP023239
Bacillota
Paenibacillus sp. URB8-2 [AP023239]
5565692
5565602
-
Ser
CGA
-
¡û
>C211132212
CP060293
Bacillota
Paenibacillus sp. PAMC21692 [CP060293]
889698
889608
-
Ser
CGA
-
¡û
>C211340742
CP075889
Bacillota
Paenibacillus agaridevorans HCL2020 [CP075889]
6902106
6902016
-
Ser
CGA
-
¡û
>W2310028645
BSSQ01000016
Bacillota
Paenibacillus glycanilyticus mu1 [BSSQ]
1007
1097
+
Ser
CGA
[ENA]
¡û
>W1511577217
LAQO01000053
Bacillota
Paenibacillus algorifonticola XJ259 [LAQO]
26279
26369
+
Ser
CGA
[ENA]
¡û
>W1610734585
LMLV01000012
Bacillota
Paenibacillus sp. Leaf72 [LMLV]
28463
28553
+
Ser
CGA
[ENA]
¡û
>W1610742039
LMRV01000057
Bacillota
Paenibacillus sp. Soil522 [LMRV]
26098
26188
+
Ser
CGA
[ENA]
¡û
>W1710560591
FONN01000007
Bacillota
Paenibacillus algorifonticola [FONN]
210179
210089
-
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK