This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Bacillota
Anticodon = CGT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.507679 (90 seq.)
>W1711677684
MRTR01000008
Bacillota
Paenibacillus macerans [MRTR]
17871
17946
+
Thr
CGT
[ENA]
¡û
>W131235813
AULW01000010
Bacillota
Paenibacillus pasadenensis DSM 19293 [AULW]
119419
119494
+
Thr
CGT
[ENA]
¡û
>W141220228
AZXQ01000005
Bacillota
Cohnella panacarvi Gsoil 349 [AZXQ]
476572
476497
-
Thr
CGT
[ENA]
¡û
>W141252015
CBRA020000084
Bacillota
Paenibacillus sp. P22 [CBRA]
33767
33842
+
Thr
CGT
[ENA]
¡û
>WENV183726670
PJTO01000062
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
69890
69965
+
Thr
CGT
[ENA]
¡û
>WENV183736979
PJUD01000156
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
3822
3747
-
Thr
CGT
[ENA]
¡û
>WENV170705669
LNAP01000101
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
75116
75191
+
Thr
CGT
[ENA]
¡û
>W141462439
JFHT01000194
Bacillota
Paenibacillus darwinianus [JFHT]
7622
7697
+
Thr
CGT
[ENA]
¡û
>W141462459
JFHU01000200
Bacillota
Paenibacillus darwinianus [JFHU]
7622
7697
+
Thr
CGT
[ENA]
¡û
>W141462495
JFHV01000233
Bacillota
Paenibacillus darwinianus [JFHV]
7018
6943
-
Thr
CGT
[ENA]
¡û
>C191106146
CP033433
Bacillota
Cohnella candidum 18JY8-7 [CP033433]
4843304
4843379
+
Thr
CGT
-
¡û
>W1910154712
BILZ01000009
Bacillota
Paenibacillus kobensis NBRC 15729 [BILZ]
70957
71032
+
Thr
CGT
[ENA]
¡û
>W1910154713
BILZ01000012
Bacillota
Paenibacillus kobensis NBRC 15729 [BILZ]
101686
101611
-
Thr
CGT
[ENA]
¡û
>W1910154932
BIMD01000065
Bacillota
Paenibacillus humicus NBRC 102415 [BIMD]
10335
10410
+
Thr
CGT
[ENA]
¡û
>W1910155268
BIML01000013
Bacillota
Paenibacillus xylaniclasticus NBRC 106381 [BIML]
176174
176249
+
Thr
CGT
[ENA]
¡û
>W1910155286
BIML01000023
Bacillota
Paenibacillus xylaniclasticus NBRC 106381 [BIML]
7780
7855
+
Thr
CGT
[ENA]
¡û
>W1910155339
BIMM01000103
Bacillota
Paenibacillus pasadenensis NBRC 101214 [BIMM]
12239
12314
+
Thr
CGT
[ENA]
¡û
>W1910827183
MWSG01000025
Bacillota
Cohnella sp. CIP 111063 [MWSG]
122045
121970
-
Thr
CGT
[ENA]
¡û
>W1910891800
NFEZ01000001
Bacillota
Paenibacillus pasadenensis R16 [NFEZ]
728257
728332
+
Thr
CGT
[ENA]
¡û
>W1911075522
NMUQ01000002
Bacillota
Paenibacillus herberti R33 [NMUQ]
297606
297531
-
Thr
CGT
[ENA]
¡û
>W1911771069
QXJM01000039
Bacillota
Cohnella sp. K2E09-144 [QXJM]
635677
635752
+
Thr
CGT
[ENA]
¡û
>W1810367706
PVYW01000025
Bacillota
Cohnella sp. SGD-V74 [PVYW]
122045
121970
-
Thr
CGT
[ENA]
¡û
>W1810608877
QGTQ01000010
Bacillota
Paenibacillus cellulosilyticus CECT 5696 [QGTQ]
33066
33141
+
Thr
CGT
[ENA]
¡û
>W1810608924
QGTQ01000040
Bacillota
Paenibacillus cellulosilyticus CECT 5696 [QGTQ]
45468
45393
-
Thr
CGT
[ENA]
¡û
>W1810674236
QJVJ01000013
Bacillota
Paenibacillus flagellatus DXL2 [QJVJ]
151468
151540
+
Thr
CGT
[ENA]
¡û
>W1810675968
QKLR01000001
Bacillota
Cohnella sp. OV312 [QKLR]
1064218
1064143
-
Thr
CGT
[ENA]
¡û
>W1810760044
QPJW01000007
Bacillota
Fontibacillus phaseoli CECT 8333 [QPJW]
5896
5821
-
Thr
CGT
[ENA]
¡û
>W1810787842
QRDZ01000042
Bacillota
Cohnella phaseoli CECT 7287 [QRDZ]
9106
9031
-
Thr
CGT
[ENA]
¡û
>PL201001191
CP054613
Bacillota
Paenibacillus cellulosilyticus KACC 14175 plasmid:unnamed4 [CP054613]
338845
338770
-
Thr
CGT
[ENA]
¡û
>W2010087647
BILZ01000009
Bacillota
Paenibacillus kobensis NBRC 15729 [BILZ]
70957
71032
+
Thr
CGT
[ENA]
¡û
>W2010087648
BILZ01000012
Bacillota
Paenibacillus kobensis NBRC 15729 [BILZ]
101686
101611
-
Thr
CGT
[ENA]
¡û
>W2010087867
BIMD01000065
Bacillota
Paenibacillus humicus NBRC 102415 [BIMD]
10335
10410
+
Thr
CGT
[ENA]
¡û
>W2010088203
BIML01000013
Bacillota
Paenibacillus xylaniclasticus NBRC 106381 [BIML]
176174
176249
+
Thr
CGT
[ENA]
¡û
>W2010088221
BIML01000023
Bacillota
Paenibacillus xylaniclasticus NBRC 106381 [BIML]
7780
7855
+
Thr
CGT
[ENA]
¡û
>W2010088274
BIMM01000103
Bacillota
Paenibacillus pasadenensis NBRC 101214 [BIMM]
12239
12314
+
Thr
CGT
[ENA]
¡û
>W2010144899
BLWM01000005
Bacillota
Paenibacillus curdlanolyticus B-6 [BLWM]
33342
33417
+
Thr
CGT
[ENA]
¡û
>W2010144904
BLWM01000013
Bacillota
Paenibacillus curdlanolyticus B-6 [BLWM]
176487
176562
+
Thr
CGT
[ENA]
¡û
>W2010743502
JACJVN010000057
Bacillota
Cohnella lubricantis DSM 103658 [JACJVN]
147326
147401
+
Thr
CGT
[ENA]
¡û
>W2010743530
JACJVO010000005
Bacillota
Cohnella sp. CBP 2801 [JACJVO]
9488
9563
+
Thr
CGT
[ENA]
¡û
>W2010743603
JACJVP010000047
Bacillota
Cohnella nanjingensis DSM 28246 [JACJVP]
146259
146184
-
Thr
CGT
[ENA]
¡û
>W2010743676
JACJVQ010000021
Bacillota
Cohnella thailandensis DSM 25241 [JACJVQ]
179978
179903
-
Thr
CGT
[ENA]
¡û
>W2010743684
JACJVR010000002
Bacillota
Cohnella xylanilytica DSM 25239 [JACJVR]
159838
159763
-
Thr
CGT
[ENA]
¡û
>W2010919870
MWSG01000025
Bacillota
Cohnella sp. CIP 111063 [MWSG]
122045
121970
-
Thr
CGT
[ENA]
¡û
>W2010956670
NFEZ01000001
Bacillota
Paenibacillus pasadenensis R16 [NFEZ]
728257
728332
+
Thr
CGT
[ENA]
¡û
>W2011004716
NMUQ01000002
Bacillota
Paenibacillus herberti R33 [NMUQ]
297606
297531
-
Thr
CGT
[ENA]
¡û
>W2011328369
QXJM01000039
Bacillota
Cohnella sp. K2E09-144 [QXJM]
635677
635752
+
Thr
CGT
[ENA]
¡û
>W2011367640
RBAH01000043
Bacillota
Paenibacillus ginsengarvi KCTC 13059 [RBAH]
26683
26609
-
Thr
CGT
[ENA]
¡û
>W2011391075
RBZM01000008
Bacillota
Cohnella sp. M2MS4P-1 [RBZM]
420133
420208
+
Thr
CGT
[ENA]
¡û
>W2011393185
RCCY01000011
Bacillota
Paenibacillus sp. RU15A [RCCY]
628857
628932
+
Thr
CGT
[ENA]
¡û
>W2011485016
RRCN01000001
Bacillota
Paenibacillus sp. KCOM 3021 [RRCN]
2738425
2738500
+
Thr
CGT
[ENA]
¡û
>W2011512305
RZJR01000007
Bacillota
Cohnella sp. AR92 [RZJR]
302266
302191
-
Thr
CGT
[ENA]
¡û
>W2011691764
SSOB01000017
Bacillota
Cohnella sp. CC-MHH1044 [SSOB]
93482
93407
-
Thr
CGT
[ENA]
¡û
>W2011698158
SUPK01000008
Bacillota
Cohnella sp. CAU 1483 [SUPK]
180467
180542
+
Thr
CGT
[ENA]
¡û
>W2011973606
VCIW01000021
Bacillota
Paenibacillus sp. SYSU_K30003 [VCIW]
85120
85195
+
Thr
CGT
[ENA]
¡û
>W2011973609
VCIW01000024
Bacillota
Paenibacillus sp. SYSU_K30003 [VCIW]
106996
106922
-
Thr
CGT
[ENA]
¡û
>W2011979034
VCRA01000004
Bacillota
Paenibacillus sp. SYSU_K30004 [VCRA]
423626
423551
-
Thr
CGT
[ENA]
¡û
>W2011980435
VDCQ01000008
Bacillota
Paenibacillus hemerocallicola KCTC 33185 [VDCQ]
122053
121981
-
Thr
CGT
[ENA]
¡û
>W2012098211
VNJJ01000004
Bacillota
Cohnella sp. G13 [VNJJ]
299034
298959
-
Thr
CGT
[ENA]
¡û
>W2110066183
BORM01000012
Bacillota
Cohnella xylanilytica J19TS2 [BORM]
61681
61756
+
Thr
CGT
[ENA]
¡û
>W2110068207
BOSL01000010
Bacillota
Paenibacillus vini J42TS3 [BOSL]
182331
182256
-
Thr
CGT
[ENA]
¡û
>W2110284033
JACXIZ010000058
Bacillota
Paenibacillus sp. IB182496 [JACXIZ]
7065
6990
-
Thr
CGT
[ENA]
¡û
>W2110284086
JACXJA010000030
Bacillota
Paenibacillus sp. IB182363 [JACXJA]
88348
88276
-
Thr
CGT
[ENA]
¡û
>W2110285555
JACXZA010000001
Bacillota
Paenibacillus sp. PR3 [JACXZA]
567698
567773
+
Thr
CGT
[ENA]
¡û
>W2110285569
JACXZA010000005
Bacillota
Paenibacillus sp. PR3 [JACXZA]
426614
426539
-
Thr
CGT
[ENA]
¡û
>W2110430887
JAEMXM010000017
Bacillota
Paenibacillus sp. YIM B00362 YIM B00362 [JAEMXM]
92014
92089
+
Thr
CGT
[ENA]
¡û
>W2110497745
JAFHKM010000002
Bacillota
Cohnella algarum Pch-40 [JAFHKM]
2589344
2589419
+
Thr
CGT
[ENA]
¡û
>W2110539281
JAGGKW010000014
Bacillota
Cohnella thailandensis DSM 25241 [JAGGKW]
144706
144631
-
Thr
CGT
[ENA]
¡û
>W2110540420
JAGGLW010000017
Bacillota
Cohnella lubricantis DSM 103658 [JAGGLW]
21466
21391
-
Thr
CGT
[ENA]
¡û
>W2110566987
JAGQEH010000010
Bacillota
Paenibacillus sp. Marseille-P2973 [JAGQEH]
175544
175469
-
Thr
CGT
[ENA]
¡û
>W2110580592
JAGXJW010000054
Bacillota
Cohnella sp. GbtcB17 [JAGXJW]
49691
49616
-
Thr
CGT
[ENA]
¡û
>C201104569
CP041969
Bacillota
Cohnella sp. KS 22 [CP041969]
4034778
4034853
+
Thr
CGT
-
¡û
>C201250797
CP051680
Bacillota
Cohnella sp. MFER-1 [CP051680]
6719682
6719757
+
Thr
CGT
-
¡û
>C211301985
CP072117
Bacillota
Cohnella sp. LGH [CP072117]
7294634
7294559
-
Thr
CGT
-
¡û
>C231620158
CP119317
Bacillota
Cohnella sp. [CP119317]
397870
397795
-
Thr
CGT
-
¡û
>C241024595
CP022655
Bacillota
Paenibacillus sp. RUD330 [CP022655]
4947661
4947586
-
Thr
CGT
-
¡û
>C241101182
CP045802
Bacillota
Paenibacillus sp. B01 [CP045802]
5205851
5205776
-
Thr
CGT
-
¡û
>W2110783364
WJIB01000010
Bacillota
Cohnella sp. CFH 77786 [WJIB]
20109
20034
-
Thr
CGT
[ENA]
¡û
>C241150046
CP051428
Bacillota
Paenibacillus albicereus UniB2 [CP051428]
4643233
4643158
-
Thr
CGT
-
¡û
>W10126321
AEDD01000007
Bacillota
Paenibacillus curdlanolyticus YK9 [AEDD]
139766
139691
-
Thr
CGT
[ENA]
¡û
>W10126322
AEDD01000008
Bacillota
Paenibacillus curdlanolyticus YK9 [AEDD]
170172
170247
+
Thr
CGT
[ENA]
¡û
>C241167728
CP054612
Bacillota
Paenibacillus cellulosilyticus KACC 14175 [CP054612]
594196
594271
+
Thr
CGT
-
¡û
>W11133582
AEDD01000007
Bacillota
Paenibacillus curdlanolyticus YK9 [AEDD]
139766
139691
-
Thr
CGT
[ENA]
¡û
>W11133583
AEDD01000008
Bacillota
Paenibacillus curdlanolyticus YK9 [AEDD]
170172
170247
+
Thr
CGT
[ENA]
¡û
>W1511499720
JXAL01000001
Bacillota
Cohnella kolymensis VKM B-2846 [JXAL]
537834
537759
-
Thr
CGT
[ENA]
¡û
>W1511541268
JZEJ01000001
Bacillota
Paenibacillus sp. D9 [JZEJ]
3114614
3114539
-
Thr
CGT
[ENA]
¡û
>W1610112120
CZJQ01000793
Campylobacterota
Campylobacter jejuni [CZJQ]
130
205
+
Thr
CGT
[ENA]
¡û
>W1710114824
CZJQ01000793
Campylobacterota
Campylobacter jejuni [CZJQ]
130
205
+
Thr
CGT
[ENA]
¡û
>W1710556431
FOKE01000020
Bacillota
Cohnella sp. OV330 [FOKE]
71024
71099
+
Thr
CGT
[ENA]
¡û
>W1710595417
FTLY01000002
Bacillota
Paenibacillus sp. RU4X [FTLY]
628862
628937
+
Thr
CGT
[ENA]
¡û
>W1710597315
FTND01000002
Bacillota
Paenibacillus sp. RU4T [FTND]
629249
629324
+
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK