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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Bacillota
Anticodon = GAA
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.568351 (24 seq.)
>PL201000487
CP040853
Bacillota
Lactobacillus murinus V10 plasmid:unnamed [CP040853]
18981
18907
-
Phe
GAA
[ENA]
¡û
>W2012067005
VKBS01000009
Bacillota
Lactobacillus murinus VM2V3 [VKBS]
25643
25717
+
Phe
GAA
[ENA]
¡û
>W2012067049
VKBT01000007
Bacillota
Lactobacillus murinus VM2V2 [VKBT]
25643
25717
+
Phe
GAA
[ENA]
¡û
>W2012067110
VKBU01000037
Bacillota
Lactobacillus murinus VM2F3 [VKBU]
14665
14591
-
Phe
GAA
[ENA]
¡û
>W2012067159
VKBV01000035
Bacillota
Lactobacillus murinus VM1V3 [VKBV]
4472
4546
+
Phe
GAA
[ENA]
¡û
>W2012067212
VKBW01000037
Bacillota
Lactobacillus murinus VM1V2 [VKBW]
4473
4547
+
Phe
GAA
[ENA]
¡û
>W2012067244
VKBX01000010
Bacillota
Lactobacillus murinus VM1V1 [VKBX]
26396
26470
+
Phe
GAA
[ENA]
¡û
>W2012067307
VKBY01000029
Bacillota
Lactobacillus murinus VM1F3 [VKBY]
8945
9019
+
Phe
GAA
[ENA]
¡û
>W2012067343
VKBZ01000010
Bacillota
Lactobacillus murinus VM1F2 [VKBZ]
26396
26470
+
Phe
GAA
[ENA]
¡û
>W2012067413
VKCA01000038
Bacillota
Lactobacillus murinus VM1F1 [VKCA]
14665
14591
-
Phe
GAA
[ENA]
¡û
>W2012067539
VKCD01000008
Bacillota
Lactobacillus murinus SM2F2 [VKCD]
26396
26470
+
Phe
GAA
[ENA]
¡û
>W2012067588
VKCE01000010
Bacillota
Lactobacillus murinus SM1F2 [VKCE]
26396
26470
+
Phe
GAA
[ENA]
¡û
>W2012067636
VKCF01000010
Bacillota
Lactobacillus murinus SM1F1 [VKCF]
26396
26470
+
Phe
GAA
[ENA]
¡û
>W2012067686
VKCG01000009
Bacillota
Lactobacillus murinus 3V2P2 [VKCG]
25643
25717
+
Phe
GAA
[ENA]
¡û
>W2012067734
VKCH01000009
Bacillota
Lactobacillus murinus 3V1P2 [VKCH]
26396
26470
+
Phe
GAA
[ENA]
¡û
>W2012067793
VKCI01000028
Bacillota
Lactobacillus murinus 3V1P1 [VKCI]
8945
9019
+
Phe
GAA
[ENA]
¡û
>W2012067836
VKCJ01000009
Bacillota
Lactobacillus murinus 3S2P1 [VKCJ]
26396
26470
+
Phe
GAA
[ENA]
¡û
>W2012067885
VKCK01000010
Bacillota
Lactobacillus murinus 2V1P2 [VKCK]
26396
26470
+
Phe
GAA
[ENA]
¡û
>W2012067951
VKCL01000028
Bacillota
Lactobacillus murinus 2V1P1 [VKCL]
14665
14591
-
Phe
GAA
[ENA]
¡û
>W2012067988
VKCM01000009
Bacillota
Lactobacillus murinus 2S2P1 [VKCM]
26396
26470
+
Phe
GAA
[ENA]
¡û
>W2012068041
VKCN01000009
Bacillota
Lactobacillus murinus 1V2P2 [VKCN]
25643
25717
+
Phe
GAA
[ENA]
¡û
>W2012068089
VKCO01000008
Bacillota
Lactobacillus murinus 1V1P2 [VKCO]
26396
26470
+
Phe
GAA
[ENA]
¡û
>W2012068148
VKCP01000028
Bacillota
Lactobacillus murinus 1V1P1 [VKCP]
8945
9019
+
Phe
GAA
[ENA]
¡û
>W2012068191
VKCQ01000010
Bacillota
Lactobacillus murinus 1S2P1 [VKCQ]
26396
26470
+
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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