This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Bacillota
Anticodon = GAG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.174932 (78 seq.)
>W1711010077
LQRA01000060
Bacillota
Paenibacillus elgii [LQRA]
88788
88703
-
Leu
GAG
[ENA]
¡û
>W1711010135
LQRA01000121
Bacillota
Paenibacillus elgii [LQRA]
52710
52624
-
Leu
GAG
[ENA]
¡û
>W141754303
JNVM01000001
Bacillota
Paenibacillus tyrfis MSt1 [JNVM]
77264
77178
-
Leu
GAG
[ENA]
¡û
>W1910154661
BILX01000090
Bacillota
Paenibacillus ehimensis NBRC 15659 [BILX]
8915
9000
+
Leu
GAG
[ENA]
¡û
>W1910154818
BIMB01000041
Bacillota
Paenibacillus elgii NBRC 100335 [BIMB]
14354
14269
-
Leu
GAG
[ENA]
¡û
>W1910155116
BIMH01000050
Bacillota
Paenibacillus validus NBRC 15382 [BIMH]
32788
32870
+
Leu
GAG
[ENA]
¡û
>W1910155121
BIMH01000057
Bacillota
Paenibacillus validus NBRC 15382 [BIMH]
24579
24494
-
Leu
GAG
[ENA]
¡û
>W1910505731
FYEP01000026
Bacillota
Paenibacillus elgii B69 [FYEP]
77118
77033
-
Leu
GAG
[ENA]
¡û
>W1810402776
PYHP01000019
Bacillota
Paenibacillus elgii AC13 [PYHP]
92180
92095
-
Leu
GAG
[ENA]
¡û
>W1810402844
PYHP01000080
Bacillota
Paenibacillus elgii AC13 [PYHP]
90439
90354
-
Leu
GAG
[ENA]
¡û
>W1810608862
QGTQ01000005
Bacillota
Paenibacillus cellulosilyticus CECT 5696 [QGTQ]
1093
1178
+
Leu
GAG
[ENA]
¡û
>W1810608915
QGTQ01000036
Bacillota
Paenibacillus cellulosilyticus CECT 5696 [QGTQ]
1324
1409
+
Leu
GAG
[ENA]
¡û
>PL201001132
CP054613
Bacillota
Paenibacillus cellulosilyticus KACC 14175 plasmid:unnamed4 [CP054613]
2548261
2548346
+
Leu
GAG
[ENA]
¡û
>C151075945
CP011058
Bacillota
Paenibacillus beijingensis DSM 24997 [CP011058]
1187408
1187323
-
Leu
GAG
[Ensembl]
¡û
>W2010087596
BILX01000090
Bacillota
Paenibacillus ehimensis NBRC 15659 [BILX]
8915
9000
+
Leu
GAG
[ENA]
¡û
>W2010087753
BIMB01000041
Bacillota
Paenibacillus elgii NBRC 100335 [BIMB]
14354
14269
-
Leu
GAG
[ENA]
¡û
>W2010088051
BIMH01000050
Bacillota
Paenibacillus validus NBRC 15382 [BIMH]
32788
32870
+
Leu
GAG
[ENA]
¡û
>W2010088056
BIMH01000057
Bacillota
Paenibacillus validus NBRC 15382 [BIMH]
24579
24494
-
Leu
GAG
[ENA]
¡û
>W2010425420
FYEP01000026
Bacillota
Paenibacillus elgii B69 [FYEP]
77118
77033
-
Leu
GAG
[ENA]
¡û
>W2010471269
JAAGWC010000069
Bacillota
Paenibacillus elgii LMG 24465 [JAAGWC]
14353
14268
-
Leu
GAG
[ENA]
¡û
>W2010471311
JAAGWC010000172
Bacillota
Paenibacillus elgii LMG 24465 [JAAGWC]
43025
42940
-
Leu
GAG
[ENA]
¡û
>W2010488632
JAAIVH010000001
Bacillota
Paenibacillus elgii SWL-W8 [JAAIVH]
2350569
2350654
+
Leu
GAG
[ENA]
¡û
>W2010488663
JAAIVH010000001
Bacillota
Paenibacillus elgii SWL-W8 [JAAIVH]
7668529
7668444
-
Leu
GAG
[ENA]
¡û
>W2011973621
VCIW01000024
Bacillota
Paenibacillus sp. SYSU_K30003 [VCIW]
105904
105820
-
Leu
GAG
[ENA]
¡û
>W2011973639
VCIW01000037
Bacillota
Paenibacillus sp. SYSU_K30003 [VCIW]
31448
31365
-
Leu
GAG
[ENA]
¡û
>W2012037450
VIDW01000041
Bacillota
Paenibacillus sp. tmac-D7 [VIDW]
1489
1571
+
Leu
GAG
[ENA]
¡û
>W2012037474
VIDW01000062
Bacillota
Paenibacillus sp. tmac-D7 [VIDW]
24529
24444
-
Leu
GAG
[ENA]
¡û
>W2012098134
VNJI01000057
Bacillota
Paenibacillus sp. JC52 [VNJI]
47599
47514
-
Leu
GAG
[ENA]
¡û
>W2012402158
WNZX01000036
Bacillota
Paenibacillus validus 2CS3 [WNZX]
23696
23614
-
Leu
GAG
[ENA]
¡û
>W2012402163
WNZX01000038
Bacillota
Paenibacillus validus 2CS3 [WNZX]
439
524
+
Leu
GAG
[ENA]
¡û
>W2012432405
WSTC01000051
Bacillota
Paenibacillus sp. MMS18-CY102 [WSTC]
26717
26632
-
Leu
GAG
[ENA]
¡û
>W2012435450
WTLI01000008
Bacillota
Paenibacillus sp. YIM B00363 [WTLI]
60223
60307
+
Leu
GAG
[ENA]
¡û
>W2012450015
WUWM01000007
Bacillota
Paenibacillus sp. SJY2 [WUWM]
238225
238140
-
Leu
GAG
[ENA]
¡û
>W2012450052
WUWM01000017
Bacillota
Paenibacillus sp. SJY2 [WUWM]
98981
98899
-
Leu
GAG
[ENA]
¡û
>W2110011837
BCPS01000040
Bacillota
Paenibacillus sp. EPM92 [BCPS]
16496
16578
+
Leu
GAG
[ENA]
¡û
>W2110011880
BCPS01000105
Bacillota
Paenibacillus sp. EPM92 [BCPS]
24833
24748
-
Leu
GAG
[ENA]
¡û
>W2110130691
CAJVAS010000039
Bacillota
Paenibacillus solanacearum [CAJVAS]
21164
21246
+
Leu
GAG
[ENA]
¡û
>W2110130762
CAJVCE010000010
Bacillota
Paenibacillus sp. JJ-447 [CAJVCE]
261937
261855
-
Leu
GAG
[ENA]
¡û
>W2110285589
JACXZA010000009
Bacillota
Paenibacillus sp. PR3 [JACXZA]
202093
202008
-
Leu
GAG
[ENA]
¡û
>W2110285600
JACXZA010000010
Bacillota
Paenibacillus sp. PR3 [JACXZA]
141826
141741
-
Leu
GAG
[ENA]
¡û
>W2110499427
JAFIBN010000001
Bacillota
Paenibacillus sp. PvP091 [JAFIBN]
4263601
4263517
-
Leu
GAG
[ENA]
¡û
>W2110499819
JAFIBU010000001
Bacillota
Paenibacillus sp. PvR098 [JAFIBU]
3745457
3745541
+
Leu
GAG
[ENA]
¡û
>W2110554466
JAGIOW010000001
Bacillota
Paenibacillus sp. PvP052 [JAGIOW]
313056
313140
+
Leu
GAG
[ENA]
¡û
>W2110626948
JAHNZO010000030
Bacillota
Paenibacillus sp. SM 69 [JAHNZO]
52313
52228
-
Leu
GAG
[ENA]
¡û
>C231039462
CP031168
Bacillota
Paenibacillus sp. H1-7 [CP031168]
5473529
5473444
-
Leu
GAG
-
¡û
>C231044052
CP035456
Bacillota
Paenibacillus mucilaginosus KN-18 [CP035456]
678338
678420
+
Leu
GAG
-
¡û
>C231638357
CP121215
Bacillota
Paenibacillus elgii L146 [CP121215]
1677012
1677097
+
Leu
GAG
-
¡û
>C231638402
CP121215
Bacillota
Paenibacillus elgii L146 [CP121215]
6783110
6783025
-
Leu
GAG
-
¡û
>W10126301
AEDD01000005
Bacillota
Paenibacillus curdlanolyticus YK9 [AEDD]
47132
47047
-
Leu
GAG
[ENA]
¡û
>W10126316
AEDD01000006
Bacillota
Paenibacillus curdlanolyticus YK9 [AEDD]
94641
94556
-
Leu
GAG
[ENA]
¡û
>C241167739
CP054612
Bacillota
Paenibacillus cellulosilyticus KACC 14175 [CP054612]
999795
999880
+
Leu
GAG
-
¡û
>W2310020976
BSDJ01000030
Bacillota
Paenibacillus tyrfis YSS-72.2.G2 [BSDJ]
60
145
+
Leu
GAG
[ENA]
¡û
>C11117440
CP002869
Bacillota
Paenibacillus mucilaginosus KNP414 [CP002869]
670928
671010
+
Leu
GAG
[Ensembl]
¡û
>W11133562
AEDD01000005
Bacillota
Paenibacillus curdlanolyticus YK9 [AEDD]
47132
47047
-
Leu
GAG
[ENA]
¡û
>W11133577
AEDD01000006
Bacillota
Paenibacillus curdlanolyticus YK9 [AEDD]
94641
94556
-
Leu
GAG
[ENA]
¡û
>W11163512
AFHW01000031
Bacillota
Paenibacillus elgii B69 [AFHW]
56626
56712
+
Leu
GAG
[ENA]
¡û
>C121009315
CP003235
Bacillota
Paenibacillus mucilaginosus 3016 [CP003235]
673517
673599
+
Leu
GAG
[Ensembl]
¡û
>C121012980
CP003422
Bacillota
Paenibacillus mucilaginosus K02 [CP003422]
676652
676734
+
Leu
GAG
[Ensembl]
¡û
>W1610048274
BBEA01000021
Bacillota
Paenibacillus sp. JCM 9795 [BBEA]
34555
34637
+
Leu
GAG
[ENA]
¡û
>W1610048301
BBEA01000073
Bacillota
Paenibacillus sp. JCM 9795 [BBEA]
23976
23891
-
Leu
GAG
[ENA]
¡û
>W1610048351
BBEB01000025
Bacillota
Paenibacillus sp. JCM 9796 [BBEB]
34549
34631
+
Leu
GAG
[ENA]
¡û
>W1610048379
BBEB01000071
Bacillota
Paenibacillus sp. JCM 9796 [BBEB]
399
484
+
Leu
GAG
[ENA]
¡û
>W1610543194
JTHN01000087
Bacillota
Paenibacillus sp. A3 [JTHN]
49542
49628
+
Leu
GAG
[ENA]
¡û
>W1610543229
JTHN01000199
Bacillota
Paenibacillus sp. A3 [JTHN]
714
799
+
Leu
GAG
[ENA]
¡û
>W1610858597
LQRA01000060
Bacillota
Paenibacillus elgii [LQRA]
88788
88703
-
Leu
GAG
[ENA]
¡û
>W1610858655
LQRA01000121
Bacillota
Paenibacillus elgii [LQRA]
52710
52624
-
Leu
GAG
[ENA]
¡û
>W1710044784
BBEA01000021
Bacillota
Paenibacillus sp. JCM 9795 [BBEA]
34555
34637
+
Leu
GAG
[ENA]
¡û
>W1710044811
BBEA01000073
Bacillota
Paenibacillus sp. JCM 9795 [BBEA]
23976
23891
-
Leu
GAG
[ENA]
¡û
>W1710044861
BBEB01000025
Bacillota
Paenibacillus sp. JCM 9796 [BBEB]
34549
34631
+
Leu
GAG
[ENA]
¡û
>W1710044889
BBEB01000071
Bacillota
Paenibacillus sp. JCM 9796 [BBEB]
399
484
+
Leu
GAG
[ENA]
¡û
>W1710505538
FMTT01000037
Bacillota
Paenibacillus tianmuensis [FMTT]
12894
12980
+
Leu
GAG
[ENA]
¡û
>W1710505554
FMTT01000053
Bacillota
Paenibacillus tianmuensis [FMTT]
37762
37677
-
Leu
GAG
[ENA]
¡û
>W1710511805
FMYY01000001
Bacillota
Paenibacillus sp. cl123 [FMYY]
197
282
+
Leu
GAG
[ENA]
¡û
>W1710511840
FMYY01000015
Bacillota
Paenibacillus sp. cl123 [FMYY]
119378
119460
+
Leu
GAG
[ENA]
¡û
>W1710579752
FPIU01000010
Bacillota
Paenibacillus sp. UNCCL117 [FPIU]
151303
151221
-
Leu
GAG
[ENA]
¡û
>W1710579784
FPIU01000036
Bacillota
Paenibacillus sp. UNCCL117 [FPIU]
90
175
+
Leu
GAG
[ENA]
¡û
>W1710646325
JTHN01000087
Bacillota
Paenibacillus sp. A3 [JTHN]
49542
49628
+
Leu
GAG
[ENA]
¡û
>W1710646360
JTHN01000199
Bacillota
Paenibacillus sp. A3 [JTHN]
714
799
+
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK