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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Bacillota
Anticodon = GCA
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.871575 (29 seq.)
>W1710787718
LJKA01000036
Bacillota
Bacillus cereus [LJKA]
40729
40656
-
Cys
GCA
[ENA]
¡û
>W1711284135
LZQX01000057
Bacillota
Bacillus anthracis [LZQX]
42193
42120
-
Cys
GCA
[ENA]
¡û
>W1711427056
MIFO01000025
Bacillota
Bacillus cereus [MIFO]
41252
41182
-
Cys
GCA
[ENA]
¡û
>W1712026236
NFCL01000019
Bacillota
Bacillus thuringiensis serovar coreanensis [NFCL]
17869
17939
+
Cys
GCA
[ENA]
¡û
>W1712027520
NFCY01000010
Bacillota
Bacillus thuringiensis serovar sooncheon [NFCY]
74441
74371
-
Cys
GCA
[ENA]
¡û
>W1712027521
NFCY01000010
Bacillota
Bacillus thuringiensis serovar sooncheon [NFCY]
16115
16045
-
Cys
GCA
[ENA]
¡û
>W1712027647
NFCZ01000033
Bacillota
Bacillus thuringiensis serovar guiyangiensis [NFCZ]
27985
27915
-
Cys
GCA
[ENA]
¡û
>W1712027793
NFDB01000009
Bacillota
Bacillus thuringiensis serovar roskildiensis [NFDB]
28066
27996
-
Cys
GCA
[ENA]
¡û
>w028386
ABCZ01000023
Bacillota
Bacillus cereus W [ABCZ]
45358
45431
+
Cys
GCA
[ENA]
¡û
>W1911291289
NTQB01000018
Bacillota
Bacillus anthracis AFS027725 [NTQB]
41087
41014
-
Cys
GCA
[ENA]
¡û
>W1911306867
NTYQ01000015
Bacillota
Bacillus anthracis AFS003761 [NTYQ]
41170
41097
-
Cys
GCA
[ENA]
¡û
>W1911312024
NUBM01000013
Bacillota
Bacillus wiedmannii AFS023423 [NUBM]
41023
40950
-
Cys
GCA
[ENA]
¡û
>W1911312954
NUCA01000008
Bacillota
Bacillus wiedmannii AFS020694 [NUCA]
65236
65309
+
Cys
GCA
[ENA]
¡û
>W1911327995
NUKJ01000040
Bacillota
Bacillus anthracis AFS044195 [NUKJ]
41170
41097
-
Cys
GCA
[ENA]
¡û
>W1911351556
NUXH01000033
Bacillota
Bacillus anthracis AFS081271 [NUXH]
53196
53269
+
Cys
GCA
[ENA]
¡û
>W1911353443
NUYI01000027
Bacillota
Bacillus cereus AFS077647 [NUYI]
59612
59542
-
Cys
GCA
[ENA]
¡û
>W1911364132
NVEC01000036
Bacillota
Bacillus sp. AFS059628 [NVEC]
13215
13142
-
Cys
GCA
[ENA]
¡û
>PL201000371
CP034684
Bacillota
Bacillus sp. BD59S plasmid:pBTBD59S1 [CP034684]
53453
53380
-
Cys
GCA
[ENA]
¡û
>W2010439531
JAAAWQ010000024
Bacillota
Bacillus albus B-9 [JAAAWQ]
10076
10149
+
Cys
GCA
[ENA]
¡û
>W2011075272
NTQB01000018
Bacillota
Bacillus anthracis AFS027725 [NTQB]
41087
41014
-
Cys
GCA
[ENA]
¡û
>W2011081702
NTYQ01000015
Bacillota
Bacillus anthracis AFS003761 [NTYQ]
41170
41097
-
Cys
GCA
[ENA]
¡û
>W2011085164
NUBM01000013
Bacillota
Bacillus wiedmannii AFS023423 [NUBM]
41023
40950
-
Cys
GCA
[ENA]
¡û
>W2011086094
NUCA01000008
Bacillota
Bacillus wiedmannii AFS020694 [NUCA]
65236
65309
+
Cys
GCA
[ENA]
¡û
>W2011096597
NUKJ01000040
Bacillota
Bacillus anthracis AFS044195 [NUKJ]
41170
41097
-
Cys
GCA
[ENA]
¡û
>W2011111045
NUXH01000033
Bacillota
Bacillus anthracis AFS081271 [NUXH]
53196
53269
+
Cys
GCA
[ENA]
¡û
>W2011115660
NVEC01000036
Bacillota
Bacillus sp. AFS059628 [NVEC]
13215
13142
-
Cys
GCA
[ENA]
¡û
>W2011277693
QNUD01000043
Bacillota
Bacillus sp. SH7-1 [QNUD]
3024
3094
+
Cys
GCA
[ENA]
¡û
>W121027338
AHDO01000061
Bacillota
Bacillus wiedmannii BAG6X1-1 [AHDO]
57370
57443
+
Cys
GCA
[ENA]
¡û
>W1610651573
LJKA01000036
Bacillota
Bacillus cereus [LJKA]
40729
40656
-
Cys
GCA
[ENA]
¡û
Identical group No.872657 (15 seq.)
>C191143927
CP035492
Bacillota
Paenibacillus protaetiae FW100M-2 [CP035492]
2333157
2333084
-
Cys
GCA
-
¡û
>W1910154724
BILZ01000043
Bacillota
Paenibacillus kobensis NBRC 15729 [BILZ]
51587
51514
-
Cys
GCA
[ENA]
¡û
>W1910155280
BIML01000016
Bacillota
Paenibacillus xylaniclasticus NBRC 106381 [BIML]
44354
44281
-
Cys
GCA
[ENA]
¡û
>W1810608897
QGTQ01000024
Bacillota
Paenibacillus cellulosilyticus CECT 5696 [QGTQ]
100729
100656
-
Cys
GCA
[ENA]
¡û
>W1810608938
QGTQ01000047
Bacillota
Paenibacillus cellulosilyticus CECT 5696 [QGTQ]
26813
26740
-
Cys
GCA
[ENA]
¡û
>PL201001171
CP054613
Bacillota
Paenibacillus cellulosilyticus KACC 14175 plasmid:unnamed4 [CP054613]
1552645
1552572
-
Cys
GCA
[ENA]
¡û
>PL201001189
CP054613
Bacillota
Paenibacillus cellulosilyticus KACC 14175 plasmid:unnamed4 [CP054613]
899830
899757
-
Cys
GCA
[ENA]
¡û
>W2010087659
BILZ01000043
Bacillota
Paenibacillus kobensis NBRC 15729 [BILZ]
51587
51514
-
Cys
GCA
[ENA]
¡û
>W2010088215
BIML01000016
Bacillota
Paenibacillus xylaniclasticus NBRC 106381 [BIML]
44354
44281
-
Cys
GCA
[ENA]
¡û
>W2010144944
BLWM01000028
Bacillota
Paenibacillus curdlanolyticus B-6 [BLWM]
1523
1596
+
Cys
GCA
[ENA]
¡û
>W2012432393
WSTC01000044
Bacillota
Paenibacillus sp. MMS18-CY102 [WSTC]
1377
1450
+
Cys
GCA
[ENA]
¡û
>W2110285553
JACXZA010000001
Bacillota
Paenibacillus sp. PR3 [JACXZA]
1726
1799
+
Cys
GCA
[ENA]
¡û
>W2110285592
JACXZA010000009
Bacillota
Paenibacillus sp. PR3 [JACXZA]
201758
201685
-
Cys
GCA
[ENA]
¡û
>W10126266
AEDD01000003
Bacillota
Paenibacillus curdlanolyticus YK9 [AEDD]
259585
259512
-
Cys
GCA
[ENA]
¡û
>W11133527
AEDD01000003
Bacillota
Paenibacillus curdlanolyticus YK9 [AEDD]
259585
259512
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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