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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Bacillota
Anticodon = GCT
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.15076 (65 seq.)
>W1711020680
LQYS01000132
Bacillota
Parageobacillus caldoxylosilyticus [LQYS]
50809
50901
+
Ser
GCT
[ENA]
¡û
>W1711020937
LQYW01000138
Bacillota
Parageobacillus toebii [LQYW]
1240
1148
-
Ser
GCT
[ENA]
¡û
>W1711178925
LWHE01000092
Bacillota
Geobacillus subterraneus [LWHE]
155
63
-
Ser
GCT
[ENA]
¡û
>W1711216396
LXMA01000041
Bacillota
Parageobacillus thermoglucosidasius thermoglucosidans [LXMA]
981
889
-
Ser
GCT
[ENA]
¡û
>W1711926468
NADP01000034
Bacillota
Geobacillus sp. 44B [NADP]
1177
1085
-
Ser
GCT
[ENA]
¡û
>W1711926559
NADQ01000060
Bacillota
Geobacillus sp. 44C [NADQ]
1160
1068
-
Ser
GCT
[ENA]
¡û
>W1711926626
NADR01000016
Bacillota
Geobacillus sp. 46C-IIa [NADR]
57087
57179
+
Ser
GCT
[ENA]
¡û
>W1711926668
NADS01000009
Bacillota
Geobacillus sp. 47C-IIb [NADS]
1237
1145
-
Ser
GCT
[ENA]
¡û
>C171066182
CP017694
Bacillota
Geobacillus thermodenitrificans KCTC3902 [CP017694]
1599391
1599299
-
Ser
GCT
-
¡û
>C171102993
CP020030
Bacillota
Geobacillus thermodenitrificans T12 [CP020030]
256246
256338
+
Ser
GCT
-
¡û
>W131045590
AMRO01000034
Bacillota
Parageobacillus caldoxylosilyticus CIC9 [AMRO]
735
643
-
Ser
GCT
[ENA]
¡û
>C010160
CP000557
Bacillota
Geobacillus thermodenitrificans NG80-2 [CP000557]
224780
224872
+
Ser
GCT
[Ensembl]
¡û
>W141056157
AOTZ01000001
Bacillota
Parageobacillus genomosp. 1 NUB3621 [AOTZ]
123789
123881
+
Ser
GCT
[ENA]
¡û
>W08008616
ABLJ01000010
Bacillota
Geobacillus sp. WCH70 [ABLJ]
62907
62999
+
Ser
GCT
[ENA]
¡û
>W08011428
ABVH01000013
Bacillota
Geobacillus thermodenitrificans G11MC16 [ABVH]
1736
1647
-
Ser
GCT
[ENA]
¡û
>W141186784
AYKT01000014
Bacillota
Geobacillus thermodenitrificans subsp. thermodenitrificans DSM 465 [AYKT]
1032
940
-
Ser
GCT
[ENA]
¡û
>W141234465
BAWO01000029
Bacillota
Parageobacillus caldoxylosilyticus NBRC 107762 [BAWO]
93296
93388
+
Ser
GCT
[ENA]
¡û
>C181027037
CP017690
Bacillota
Geobacillus thermodenitrificans ID-1 [CP017690]
1845816
1845724
-
Ser
GCT
-
¡û
>W1910874427
NDYL01000001
Bacillota
Geobacillus galactosidasius DSM 18751 [NDYL]
267617
267709
+
Ser
GCT
[ENA]
¡û
>C09106468
CP001638
Bacillota
Geobacillus sp. WCH70 [CP001638]
234173
234265
+
Ser
GCT
[Ensembl]
¡û
>W1910891567
NEWL01000009
Bacillota
Geobacillus uzenensis BGSC 92A1 [NEWL]
254267
254175
-
Ser
GCT
[ENA]
¡û
>W1911411746
NWUZ01000001
Bacillota
Geobacillus sp. AYN2 [NWUZ]
649341
649433
+
Ser
GCT
[ENA]
¡û
>W1810143719
PIJH01000010
Bacillota
Geobacillus thermodenitrificans JSC_T9a [PIJH]
1238
1146
-
Ser
GCT
[ENA]
¡û
>W1810154835
PIZS01000062
Bacillota
Geobacillus thermodenitrificans OS27 [PIZS]
1132
1040
-
Ser
GCT
[ENA]
¡û
>W1810530281
QCWL01000001
Bacillota
Geobacillus sp. LYN3 [QCWL]
691253
691345
+
Ser
GCT
[ENA]
¡û
>W1810789080
QREZ01000025
Bacillota
Parageobacillus toebii PW12 [QREZ]
23873
23965
+
Ser
GCT
[ENA]
¡û
>PL201000869
CP051163
Bacillota
Geobacillus subterraneus CPW16 plasmid:pBsrF12 [CP051163]
7661
7569
-
Ser
GCT
[ENA]
¡û
>W2010515679
JAAMPN010000028
Bacillota
Bacillus megaterium IN_866 [JAAMPN]
13820
13728
-
Ser
GCT
[ENA]
¡û
>W2010561533
JAASRS010000001
Bacillota
Saccharococcus thermophilus DSM 4749 [JAASRS]
27132
27040
-
Ser
GCT
[ENA]
¡û
>W2010640147
JABVYQ010000010
Bacillota
Parageobacillus sp. VR-IP [JABVYQ]
840
748
-
Ser
GCT
[ENA]
¡û
>W2010699029
JACHER010000023
Bacillota
Geobacillus subterraneus DSM 23066 [JACHER]
1414
1322
-
Ser
GCT
[ENA]
¡û
>W2010723821
JACICX010000014
Bacillota
Parageobacillus caldoxylosilyticus DSM 12041 [JACICX]
486
394
-
Ser
GCT
[ENA]
¡û
>W2010723949
JACICZ010000022
Bacillota
Parageobacillus toebii NBRC 107807 DSM 14590 [JACICZ]
21519
21611
+
Ser
GCT
[ENA]
¡û
>W2010943130
NDYL01000001
Bacillota
Geobacillus galactosidasius DSM 18751 [NDYL]
267617
267709
+
Ser
GCT
[ENA]
¡û
>W2010956437
NEWL01000009
Bacillota
Geobacillus uzenensis BGSC 92A1 [NEWL]
254267
254175
-
Ser
GCT
[ENA]
¡û
>W2011138247
NWUZ01000001
Bacillota
Geobacillus sp. AYN2 [NWUZ]
649341
649433
+
Ser
GCT
[ENA]
¡û
>W2011404691
RCWX01000001
Bacillota
Parageobacillus toebii NBRC 107807 DSM 14590 [RCWX]
1131779
1131871
+
Ser
GCT
[ENA]
¡û
>W2011546911
SDLB01000100
Bacillota
Geobacillus sp. MR [SDLB]
1411
1319
-
Ser
GCT
[ENA]
¡û
>W2011547162
SDLE01000045
Bacillota
Geobacillus sp. NFOSA3 [SDLE]
22616
22708
+
Ser
GCT
[ENA]
¡û
>W2012125108
VRMH01000009
Bacillota
Geobacillus sp. SY1 [VRMH]
9435
9343
-
Ser
GCT
[ENA]
¡û
>W2012125146
VRMI01000041
Bacillota
Geobacillus sp. AYS3 [VRMI]
21638
21730
+
Ser
GCT
[ENA]
¡û
>C211051835
CP040553
Bacillota
Parageobacillus caldoxylosilyticus ER4B [CP040553]
1469528
1469436
-
Ser
GCT
-
¡û
>C211147464
CP061473
Bacillota
Geobacillus sp. 47C-IIb [CP061473]
2183963
2184055
+
Ser
GCT
-
¡û
>C211147577
CP061474
Bacillota
Geobacillus sp. 46C-IIa [CP061474]
3175279
3175187
-
Ser
GCT
-
¡û
>C211147641
CP061475
Bacillota
Geobacillus sp. 44C [CP061475]
1804841
1804933
+
Ser
GCT
-
¡û
>C211147760
CP061476
Bacillota
Geobacillus sp. 44B [CP061476]
836286
836194
-
Ser
GCT
-
¡û
>C211277554
CP070511
Bacillota
Parageobacillus toebii NEB718 [CP070511]
258152
258060
-
Ser
GCT
-
¡û
>C231017626
AP025623
Bacillota
Parageobacillus caldoxylosilyticus KH1-5 [AP025623]
243936
244028
+
Ser
GCT
-
¡û
>C231017713
AP025624
Bacillota
Parageobacillus caldoxylosilyticus KH1-6 [AP025624]
243936
244028
+
Ser
GCT
-
¡û
>C231017800
AP025625
Bacillota
Parageobacillus caldoxylosilyticus KH3-5 [AP025625]
235625
235717
+
Ser
GCT
-
¡û
>C231017913
AP025627
Bacillota
Parageobacillus sp. KH3-4 [AP025627]
3577096
3577004
-
Ser
GCT
-
¡û
>C231470671
CP103461
Bacillota
Geobacillus sp. CX412 [CP103461]
3236249
3236157
-
Ser
GCT
-
¡û
>C241058421
CP041632
Bacillota
Geobacillus sp. E263 [CP041632]
3235774
3235682
-
Ser
GCT
-
¡û
>C241136412
CP049703
Bacillota
Parageobacillus toebii NBRC 107807 DSM 14590 [CP049703]
1131779
1131871
+
Ser
GCT
-
¡û
>C241148834
CP051162
Bacillota
Geobacillus subterraneus CPW16 [CP051162]
684884
684976
+
Ser
GCT
-
¡û
>C241309411
CP133461
Bacillota
Geobacillus thermodenitrificans K1041 [CP133461]
238990
239082
+
Ser
GCT
-
¡û
>C241310639
CP133588
Bacillota
Parageobacillus toebii NEB857 [CP133588]
1326680
1326772
+
Ser
GCT
-
¡û
>C161071493
CP014342
Bacillota
Geobacillus subterraneus KCTC 3922 [CP014342]
3002141
3002049
-
Ser
GCT
[Ensembl]
¡û
>W1610078107
BDAQ01000024
Bacillota
Parageobacillus toebii NBRC 107807 [BDAQ]
1231
1139
-
Ser
GCT
[ENA]
¡û
>W1610868968
LQYS01000132
Bacillota
Parageobacillus caldoxylosilyticus [LQYS]
50809
50901
+
Ser
GCT
[ENA]
¡û
>W1610869225
LQYW01000138
Bacillota
Parageobacillus toebii [LQYW]
1240
1148
-
Ser
GCT
[ENA]
¡û
>W1610986834
LWHE01000092
Bacillota
Geobacillus subterraneus [LWHE]
155
63
-
Ser
GCT
[ENA]
¡û
>W1611001304
LXMA01000041
Bacillota
Parageobacillus thermoglucosidasius thermoglucosidans [LXMA]
981
889
-
Ser
GCT
[ENA]
¡û
>W1710076666
BDAQ01000024
Bacillota
Parageobacillus toebii NBRC 107807 [BDAQ]
1231
1139
-
Ser
GCT
[ENA]
¡û
>W1710555755
FOJS01000047
Bacillota
Parageobacillus thermantarcticus [FOJS]
1516
1424
-
Ser
GCT
[ENA]
¡û
Identical group No.23640 (3 seq.)
>W1911324507
NUIL01000015
Bacillota
Bacillus cereus AFS050027 [NUIL]
100118
100027
-
Ser
GCT
[ENA]
¡û
>PL201000359
CP032366
Bacillota
Bacillus wiedmannii SR52 plasmid:unnamed1 [CP032366]
124630
124721
+
Ser
GCT
[ENA]
¡û
>W1511536593
JYPL01000109
Bacillota
Bacillus cereus HWW 274-2 [JYPL]
123034
122943
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK