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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Bacillota
Anticodon = GGA
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.36059 (48 seq.)
>W1710872256
LMLV01000032
Bacillota
Paenibacillus sp. Leaf72 [LMLV]
219
309
+
Ser
GGA
[ENA]
¡û
>W1710879645
LMRV01000028
Bacillota
Paenibacillus sp. Soil522 [LMRV]
120674
120584
-
Ser
GGA
[ENA]
¡û
>W1711309562
MAQX01000002
Bacillota
Bacillus sp. FJAT-26390 [MAQX]
199448
199358
-
Ser
GGA
[ENA]
¡û
>W1711676955
MRTD01000064
Bacillota
Paenibacillus sp. FSL A5-0031 [MRTD]
320
230
-
Ser
GGA
[ENA]
¡û
>W131235750
AULV01000006
Bacillota
Paenibacillus harenae DSM 16969 [AULV]
487583
487493
-
Ser
GGA
[ENA]
¡û
>W08007935
ABKS01000010
Bacillota
Paenibacillus sp. JDR-2 [ABKS]
1591
1681
+
Ser
GGA
[ENA]
¡û
>W141255870
CBVJ010000080
Bacillota
Paenibacillus gorillae G1 [CBVJ]
23595
23505
-
Ser
GGA
[ENA]
¡û
>C181021416
CP016808
Bacillota
Paenibacillus sp. BIHB 4019 [CP016808]
3584338
3584428
+
Ser
GGA
-
¡û
>C191143915
CP035492
Bacillota
Paenibacillus protaetiae FW100M-2 [CP035492]
2334312
2334222
-
Ser
GGA
-
¡û
>C191143934
CP035492
Bacillota
Paenibacillus protaetiae FW100M-2 [CP035492]
1977015
1976925
-
Ser
GGA
-
¡û
>C09108173
CP001656
Bacillota
Paenibacillus sp. JDR-2 [CP001656]
210686
210776
+
Ser
GGA
[Ensembl]
¡û
>C09108202
CP001656
Bacillota
Paenibacillus sp. JDR-2 [CP001656]
1315086
1315176
+
Ser
GGA
[Ensembl]
¡û
>W1810608884
QGTQ01000024
Bacillota
Paenibacillus cellulosilyticus CECT 5696 [QGTQ]
101898
101808
-
Ser
GGA
[ENA]
¡û
>W1810608926
QGTQ01000047
Bacillota
Paenibacillus cellulosilyticus CECT 5696 [QGTQ]
27942
27852
-
Ser
GGA
[ENA]
¡û
>W1810759081
QPJD01000019
Bacillota
Paenibacillus prosopidis CECT 7506 [QPJD]
228
318
+
Ser
GGA
[ENA]
¡û
>PL201001158
CP054613
Bacillota
Paenibacillus cellulosilyticus KACC 14175 plasmid:unnamed4 [CP054613]
1553814
1553724
-
Ser
GGA
[ENA]
¡û
>PL201001177
CP054613
Bacillota
Paenibacillus cellulosilyticus KACC 14175 plasmid:unnamed4 [CP054613]
900959
900869
-
Ser
GGA
[ENA]
¡û
>W2010144900
BLWM01000010
Bacillota
Paenibacillus curdlanolyticus B-6 [BLWM]
68
158
+
Ser
GGA
[ENA]
¡û
>W2010144932
BLWM01000028
Bacillota
Paenibacillus curdlanolyticus B-6 [BLWM]
383
473
+
Ser
GGA
[ENA]
¡û
>W2010144976
BLWM01000048
Bacillota
Paenibacillus curdlanolyticus B-6 [BLWM]
4553
4463
-
Ser
GGA
[ENA]
¡û
>W2010561349
JAASRQ010000003
Bacillota
Paenibacillus sp. BK720 [JAASRQ]
329
419
+
Ser
GGA
[ENA]
¡û
>W2010561693
JAASRW010000003
Bacillota
Paenibacillus lupini CECT 8235 [JAASRW]
367
457
+
Ser
GGA
[ENA]
¡û
>W2010561727
JAASRW010000010
Bacillota
Paenibacillus lupini CECT 8235 [JAASRW]
4
94
+
Ser
GGA
[ENA]
¡û
>W2010566449
JAATHD010000008
Bacillota
Paenibacillus sp. HB172176 [JAATHD]
251941
251851
-
Ser
GGA
[ENA]
¡û
>W2010717217
JACHXW010000019
Bacillota
Paenibacillus endophyticus CECT 8234 [JACHXW]
272
362
+
Ser
GGA
[ENA]
¡û
>W2011616830
SKCD01000035
Bacillota
Paenibacillus luteus R-3 [SKCD]
232
322
+
Ser
GGA
[ENA]
¡û
>W2011694626
STGF01000041
Bacillota
Paenibacillus sp. SY21-1 [STGF]
42084
41994
-
Ser
GGA
[ENA]
¡û
>W2011973713
VCIX01000089
Bacillota
Paenibacillus sp. py1325 [VCIX]
198
288
+
Ser
GGA
[ENA]
¡û
>W2011979795
VDBO01000089
Bacillota
Paenibacillus sinopodophylli CCTCC AB 2016047 [VDBO]
78
168
+
Ser
GGA
[ENA]
¡û
>W2012408406
WOVL01000041
Bacillota
Paenibacillus sp. NEAU-GSW1 [WOVL]
27444
27354
-
Ser
GGA
[ENA]
¡û
>W2012432381
WSTC01000044
Bacillota
Paenibacillus sp. MMS18-CY102 [WSTC]
230
320
+
Ser
GGA
[ENA]
¡û
>W2012432413
WSTC01000062
Bacillota
Paenibacillus sp. MMS18-CY102 [WSTC]
10042
9952
-
Ser
GGA
[ENA]
¡û
>W2110025892
BMHY01000007
Bacillota
Paenibacillus radicis CGMCC 1.15286 [BMHY]
267
357
+
Ser
GGA
[ENA]
¡û
>W2110056593
BNJP01000006
Bacillota
Paenibacillus glycanilyticus CCI5 [BNJP]
502
592
+
Ser
GGA
[ENA]
¡û
>W2110056609
BNJP01000008
Bacillota
Paenibacillus glycanilyticus CCI5 [BNJP]
594
684
+
Ser
GGA
[ENA]
¡û
>W2110283987
JACXIY010000079
Bacillota
Paenibacillus sp. IB182493 [JACXIY]
1568
1478
-
Ser
GGA
[ENA]
¡û
>W2110285541
JACXZA010000001
Bacillota
Paenibacillus sp. PR3 [JACXZA]
573
663
+
Ser
GGA
[ENA]
¡û
>W2110285577
JACXZA010000009
Bacillota
Paenibacillus sp. PR3 [JACXZA]
203186
203096
-
Ser
GGA
[ENA]
¡û
>W10126254
AEDD01000003
Bacillota
Paenibacillus curdlanolyticus YK9 [AEDD]
260730
260640
-
Ser
GGA
[ENA]
¡û
>W10126292
AEDD01000005
Bacillota
Paenibacillus curdlanolyticus YK9 [AEDD]
47971
47881
-
Ser
GGA
[ENA]
¡û
>W11133515
AEDD01000003
Bacillota
Paenibacillus curdlanolyticus YK9 [AEDD]
260730
260640
-
Ser
GGA
[ENA]
¡û
>W11133553
AEDD01000005
Bacillota
Paenibacillus curdlanolyticus YK9 [AEDD]
47971
47881
-
Ser
GGA
[ENA]
¡û
>W1511577179
LAQO01000018
Bacillota
Paenibacillus algorifonticola XJ259 [LAQO]
189766
189676
-
Ser
GGA
[ENA]
¡û
>W1511698265
LGHP01000003
Bacillota
Bacillus sp. FJAT-28004 [LGHP]
921
1011
+
Ser
GGA
[ENA]
¡û
>W1610734602
LMLV01000032
Bacillota
Paenibacillus sp. Leaf72 [LMLV]
219
309
+
Ser
GGA
[ENA]
¡û
>W1610741991
LMRV01000028
Bacillota
Paenibacillus sp. Soil522 [LMRV]
120674
120584
-
Ser
GGA
[ENA]
¡û
>W1611057219
MAQX01000002
Bacillota
Bacillus sp. FJAT-26390 [MAQX]
199448
199358
-
Ser
GGA
[ENA]
¡û
>W1710560610
FONN01000013
Bacillota
Paenibacillus algorifonticola [FONN]
510
600
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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